Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  18491141 8.B F Gene expression analysis (transcription) : Semi-quantitative RT-PCR seed was taken at plumule and radicle emergence stage.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os01g07376 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  1 2 LOC_Os01g07376 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
  1 3 LOC_Os01g07376 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  1 4 LOC_Os01g07376 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
 
LOC_Os01g07376-thioredoxin, putative, expressed
39946-Oryza sativa (indica group)
CU:086-cv. Minghui 63
CU:144-cv. Zhenshan 97A
WT-Wild Type
h-Hours
PO:0007015-radicle emergence
PO:0020032-plumule
EO:0007196-light regimen
MCE:1000203-dark regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os01g23740 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  2 2 LOC_Os01g23740 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
  2 3 LOC_Os01g23740 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  2 4 LOC_Os01g23740 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
 
LOC_Os01g23740-OsPDIL2-2 protein disulfide isomerase PDIL2-2, expressed
39946-Oryza sativa (indica group)
CU:086-cv. Minghui 63
CU:144-cv. Zhenshan 97A
WT-Wild Type
h-Hours
PO:0007015-radicle emergence
PO:0020032-plumule
EO:0007196-light regimen
MCE:1000203-dark regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os01g68480 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  3 2 LOC_Os01g68480 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
  3 3 LOC_Os01g68480 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  3 4 LOC_Os01g68480 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
 
LOC_Os01g68480-thioredoxin, putative, expressed
39946-Oryza sativa (indica group)
CU:086-cv. Minghui 63
CU:144-cv. Zhenshan 97A
WT-Wild Type
h-Hours
PO:0007015-radicle emergence
PO:0020032-plumule
EO:0007196-light regimen
MCE:1000203-dark regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os01g73234 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  4 2 LOC_Os01g73234 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
  4 3 LOC_Os01g73234 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  4 4 LOC_Os01g73234 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
 
LOC_Os01g73234-thioredoxin, putative, expressed
39946-Oryza sativa (indica group)
CU:086-cv. Minghui 63
CU:144-cv. Zhenshan 97A
WT-Wild Type
h-Hours
PO:0007015-radicle emergence
PO:0020032-plumule
EO:0007196-light regimen
MCE:1000203-dark regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 LOC_Os02g01010 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  5 2 LOC_Os02g01010 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
  5 3 LOC_Os02g01010 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  5 4 LOC_Os02g01010 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
 
LOC_Os02g01010-OsPDIL1-4 protein disulfide isomerase PDIL1-4, expressed
39946-Oryza sativa (indica group)
CU:086-cv. Minghui 63
CU:144-cv. Zhenshan 97A
WT-Wild Type
h-Hours
PO:0007015-radicle emergence
PO:0020032-plumule
EO:0007196-light regimen
MCE:1000203-dark regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  6 1 LOC_Os02g34530 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  6 2 LOC_Os02g34530 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
  6 3 LOC_Os02g34530 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  6 4 LOC_Os02g34530 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
 
LOC_Os02g34530-OsPDIL5-3 protein disulfide isomerase PDIL5-3, expressed
39946-Oryza sativa (indica group)
CU:086-cv. Minghui 63
CU:144-cv. Zhenshan 97A
WT-Wild Type
h-Hours
PO:0007015-radicle emergence
PO:0020032-plumule
EO:0007196-light regimen
MCE:1000203-dark regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  7 1 LOC_Os02g34940 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  7 2 LOC_Os02g34940 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
  7 3 LOC_Os02g34940 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  7 4 LOC_Os02g34940 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
 
LOC_Os02g34940-OsPDIL1-3 protein disulfide isomerase PDIL1-3, expressed
39946-Oryza sativa (indica group)
CU:086-cv. Minghui 63
CU:144-cv. Zhenshan 97A
WT-Wild Type
h-Hours
PO:0007015-radicle emergence
PO:0020032-plumule
EO:0007196-light regimen
MCE:1000203-dark regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  8 1 LOC_Os04g44830 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  8 2 LOC_Os04g44830 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
  8 3 LOC_Os04g44830 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  8 4 LOC_Os04g44830 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
 
LOC_Os04g44830-thioredoxin, putative, expressed
39946-Oryza sativa (indica group)
CU:086-cv. Minghui 63
CU:144-cv. Zhenshan 97A
WT-Wild Type
h-Hours
PO:0007015-radicle emergence
PO:0020032-plumule
EO:0007196-light regimen
MCE:1000203-dark regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  9 1 LOC_Os05g06430 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  9 2 LOC_Os05g06430 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
  9 3 LOC_Os05g06430 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  9 4 LOC_Os05g06430 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
 
LOC_Os05g06430-OsPDIL2-1 protein disulfide isomerase PDIL2-1, expressed
39946-Oryza sativa (indica group)
CU:086-cv. Minghui 63
CU:144-cv. Zhenshan 97A
WT-Wild Type
h-Hours
PO:0007015-radicle emergence
PO:0020032-plumule
EO:0007196-light regimen
MCE:1000203-dark regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  10 1 LOC_Os05g11090 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  10 2 LOC_Os05g11090 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
  10 3 LOC_Os05g11090 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  10 4 LOC_Os05g11090 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
 
LOC_Os05g11090-thioredoxin, putative, expressed
39946-Oryza sativa (indica group)
CU:086-cv. Minghui 63
CU:144-cv. Zhenshan 97A
WT-Wild Type
h-Hours
PO:0007015-radicle emergence
PO:0020032-plumule
EO:0007196-light regimen
MCE:1000203-dark regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  11 1 LOC_Os05g40190 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  11 2 LOC_Os05g40190 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
  11 3 LOC_Os05g40190 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  11 4 LOC_Os05g40190 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
 
LOC_Os05g40190-thioredoxin, putative, expressed
39946-Oryza sativa (indica group)
CU:086-cv. Minghui 63
CU:144-cv. Zhenshan 97A
WT-Wild Type
h-Hours
PO:0007015-radicle emergence
PO:0020032-plumule
EO:0007196-light regimen
MCE:1000203-dark regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  12 1 LOC_Os07g08840 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  12 2 LOC_Os07g08840 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
  12 3 LOC_Os07g08840 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  12 4 LOC_Os07g08840 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
 
LOC_Os07g08840-thioredoxin, putative, expressed
39946-Oryza sativa (indica group)
CU:086-cv. Minghui 63
CU:144-cv. Zhenshan 97A
WT-Wild Type
h-Hours
PO:0007015-radicle emergence
PO:0020032-plumule
EO:0007196-light regimen
MCE:1000203-dark regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  13 1 LOC_Os08g29110 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  13 2 LOC_Os08g29110 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
  13 3 LOC_Os08g29110 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  13 4 LOC_Os08g29110 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
 
LOC_Os08g29110-thioredoxin, putative, expressed
39946-Oryza sativa (indica group)
CU:086-cv. Minghui 63
CU:144-cv. Zhenshan 97A
WT-Wild Type
h-Hours
PO:0007015-radicle emergence
PO:0020032-plumule
EO:0007196-light regimen
MCE:1000203-dark regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  14 1 LOC_Os12g18360 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  14 2 LOC_Os12g18360 # # 39946 CU:086 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
  14 3 LOC_Os12g18360 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] EO:0007196 48h # #  
  14 4 LOC_Os12g18360 # # 39946 CU:144 # WT # PO:0020032[#] PO:0007015[#] MCE:1000203 48h # #  
 
LOC_Os12g18360-NB-ARC domain containing protein, expressed
39946-Oryza sativa (indica group)
CU:086-cv. Minghui 63
CU:144-cv. Zhenshan 97A
WT-Wild Type
h-Hours
PO:0007015-radicle emergence
PO:0020032-plumule
EO:0007196-light regimen
MCE:1000203-dark regimen
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India