| Regulation details |
|
PubMed Id |
Figure
|
Type |
Experimental method |
Comment |
|
| |
23548780 |
1.v |
T |
Agronomic trait analysis |
Table 1 is divided into 5 parts.OsCga1-LOC_Os02g12790.Statistically significant difference was calculated at P<0.01. Cga1 transgenics were compared with the wildtype control (Wt-Kay) under three different N regimes: FN, SN, and LN (n < 40).1 g of slow-release fertilizer per plant along with four monthly applications of a nutrient solution containing N at 200 ml/L (NH4NO3) for full nitrogen treatment, 2 L weekly with 10 mM NO3 as SN, whereas 3 mM NO3 was used as LN. |
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| |
|
|
|
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
seed mass/total biomass |
|
| |
1 |
1 |
LOC_Os02g12790 |
LOC_Os02g12790 |
PR:007 |
39947 |
CU:176 |
# |
TRI |
# |
PO:0000003[#] |
EO:0007090 200µl |
TO:0000128 |
 0.34 |
|
| |
1 |
2 |
LOC_Os02g12790 |
LOC_Os02g12790 |
PR:007 |
39947 |
CU:176 |
# |
TRI |
# |
PO:0000003[#] |
EO:0007406 10mM |
TO:0000128 |
0.36 |
|
| |
1 |
3 |
LOC_Os02g12790 |
LOC_Os02g12790 |
PR:007 |
39947 |
CU:176 |
# |
TRI |
# |
PO:0000003[#] |
EO:0007406 3mM |
TO:0000128 |
0.28 |
|
|
| |
LOC_Os02g12790-GATA zinc finger domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TRI-Transgenic RNAi
mM-millimolar
µl-
|
PO:0000003-whole plant
EO:0007090-ammonium nitrate regimen
EO:0007406-nitrate regimen
TO:0000128-harvest index
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
seed mass/total biomass |
|
| |
2 |
1 |
LOC_Os02g12790 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0000003[#] |
EO:0007090 200µl |
TO:0000128 |
0.42 grp_2_1_1 |
|
| |
2 |
2 |
LOC_Os02g12790 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0000003[#] |
EO:0007406 10mM |
TO:0000128 |
0.4 grp_2_2_1 |
|
| |
2 |
3 |
LOC_Os02g12790 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0000003[#] |
EO:0007406 3mM |
TO:0000128 |
0.36 grp_2_3_1 |
|
|
| |
LOC_Os02g12790-GATA zinc finger domain containing protein, expressed
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
WT-Wild Type
mM-millimolar
µl-
|
PO:0000003-whole plant
EO:0007090-ammonium nitrate regimen
EO:0007406-nitrate regimen
TO:0000128-harvest index
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
seed mass/total biomass |
|
| |
3 |
1 |
LOC_Os02g12790 |
LOC_Os02g12790 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
1 |
PO:0000003[#] |
EO:0007090 200µl |
TO:0000128 |
0.43 |
|
| |
3 |
2 |
LOC_Os02g12790 |
LOC_Os02g12790 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
1 |
PO:0000003[#] |
EO:0007406 10mM |
TO:0000128 |
0.44 |
|
| |
3 |
3 |
LOC_Os02g12790 |
LOC_Os02g12790 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
1 |
PO:0000003[#] |
EO:0007406 3mM |
TO:0000128 |
0.37 |
|
|
| |
LOC_Os02g12790-GATA zinc finger domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
mM-millimolar
µl-
|
PO:0000003-whole plant
EO:0007090-ammonium nitrate regimen
EO:0007406-nitrate regimen
TO:0000128-harvest index
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
seed mass/total biomass |
|
| |
4 |
1 |
LOC_Os02g12790 |
LOC_Os02g12790 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
2 |
PO:0000003[#] |
EO:0007090 200µl |
TO:0000128 |
0.29 |
|
| |
4 |
2 |
LOC_Os02g12790 |
LOC_Os02g12790 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
2 |
PO:0000003[#] |
EO:0007406 10mM |
TO:0000128 |
0.44 |
|
| |
4 |
3 |
LOC_Os02g12790 |
LOC_Os02g12790 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
2 |
PO:0000003[#] |
EO:0007406 3mM |
TO:0000128 |
0.43 |
|
|
| |
LOC_Os02g12790-GATA zinc finger domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
mM-millimolar
µl-
|
PO:0000003-whole plant
EO:0007090-ammonium nitrate regimen
EO:0007406-nitrate regimen
TO:0000128-harvest index
|
|
| |
|
|
|
|
|
|
| Functional details |
|
PubMed Id |
Figure
|
Type |
Experimental Method |
Comment |
|
| |
23548780 |
1.v |
T |
Agronomic trait analysis |
OsCga1-LOC_Os02g12790. |
|
|
| |
S. No. |
Locus Id 1 |
GO Id |
Dep. loc |
Dep. type |
From |
To |
Motif |
|
|
| |
1 |
LOC_Os02g12790 |
GO:0010167 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
| |
LOC_Os02g12790-GATA zinc finger domain containing protein, expressed
|
GO:0010167-response to nitrate
|
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|
