Rice gene details
Searching for LOC_Os02g02890 [peptidyl-prolyl cis-trans isomerase, putative, expressed ]
with PubMed Id 19214808
  Search entire database for LOC_Os02g02890
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g02890.1 173 5 171 PF00160.13 Pro_isomerase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003755 peptidyl-prolyl cis-trans isomerase activity  
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009269 response to desiccation  
2 GO:0010286 heat acclimation  
3 GO:0042538 hyperosmotic salinity response  
4 GO:0019538 protein metabolic process (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0006464 protein modification process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005829 cytosol (RGAP)
2 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCE034 primary branch
2 AQCU062 plant height
3 CQAS22 seed set percent
4 AQAY002 aluminum sensitivity
5 CQN31 leaf senescence
6 CQN56 spikelet number
7 CQF4 leaf nitrogen content
8 AQCW007 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007041 inflorescence emergence from flag leaf sheath (+)
3 PO:0007073 2 formation of axillary shoot (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000084 upper shoot (+)
2 MCP:1000085 lower shoot (+)
3 MCP:1000100 upper leaf (+)
4 MCP:1000101 middle leaf (+)
5 MCP:1000104 middle stem (+)
6 MCP:1000402 leaf region 1 cm from shoot base (+)
7 MCP:1000404 leaf region 2-3 cm above shoot base (+)
8 PO:0009005 root (+)
9 PO:0009006 shoot system (+)
10 PO:0009049 inflorescence (+)
11 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Kumari Sumita; Singh Prabhjeet; Singla-Pareek Sneh L; Pareek Ashwani; Heterologous expression of a salinity and developmentally regulated rice cyclophilin gene (OsCyp2) in E. coli and S. cerevisiae confers tolerance towards multiple abiotic stresses. Molecular biotechnology 2009:42
PMID [19214808]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India