Rice gene details
Searching for AAZ06207 [ Sub1A-1 protein ]

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0006355 "regulation of transcription, DNA-dependent"  
2 GO:0006979 response to oxidative stress  
3 GO:0008219 cell death  
4 GO:0009409 response to cold  
5 GO:0009411 response to UV  
6 GO:0009414 response to water deprivation  
7 GO:0009611 response to wounding  
8 GO:0009619 resistance to pathogenic bacteria  
9 GO:0009628 response to abiotic stimulus  
10 GO:0009631 cold acclimation  
11 GO:0009633 drought tolerance  
12 GO:0009686 gibberellin biosynthetic process  
13 GO:0009723 response to ethylene stimulus  
14 GO:0009725 response to hormone stimulus  
15 GO:0009735 response to cytokinin stimulus  
16 GO:0009737 response to abscisic acid stimulus  
17 GO:0009739 response to gibberellin stimulus  
18 GO:0009751 response to salicylic acid stimulus  
19 GO:0009753 response to jasmonic acid stimulus  
20 GO:0009873 ethylene mediated signaling pathway  
21 GO:0010105 negative regulation of ethylene mediated signaling pathway  
22 GO:0010150 leaf senescence  
23 GO:0010200 response to chitin  
24 GO:0016049 cell growth  
25 GO:0030912 response to deep water  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007068 ethylene regimen (+)
3 EO:0007069 gibberellic acid regimen (+)
4 EO:0007105 abscisic acid regimen (+)
5 EO:0007147 growth media (+)
6 EO:0007187 salicylic acid regimen (+)
7 EO:0007270 continuous dark (no light) regimen (+)
8 EO:0007404 drought environment (+)
9 EO:0007407 methyl jasmonate (+)
10 MCE:1000010 submergence stress (+)
11 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
12 MCE:1000075 recovery treatment (+)
13 MCE:1000091 methyl viologen/paraquat (+)
14 MCE:1000103 fluridone (+)
15 MCE:1000170 paclobutrazol (PBZ) (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007022 imbibition (+)
3 PO:0007130 B reproductive growth (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000233 first leaf from newly emerging leaf (+)
2 MCP:1000234 second leaf from newly emerging leaf (+)
3 MCP:1000279 youngest leaf (+)
4 PO:0000003 whole plant (+)
5 PO:0008037 seedling (+)
6 PO:0009006 shoot system (+)
7 PO:0009010 seed (+)
8 PO:0020033 coleoptile (+)
9 PO:0020039 leaf lamina (+)
10 PO:0025034 leaf (+)
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000037 malondialdehyde (MDA) content (+)
2 MCT:1000058 wilting ratio (+)
3 MCT:1000076 leaf growth (+)
4 MCT:1000131 survival of green parts (+)
5 MCT:1000209 ethylene content (+)
6 MCT:1000218 hydrogen peroxide accumulation (+)
7 MCT:1000281 coleoptile viability (+)
8 MCT:1000289 pyruvate decarboxylase activity (+)
9 MCT:1000290 alcohol dehydrogenase activity (+)
10 MCT:1000291 ethanol content (+)
11 MCT:1000294 plant viability (+)
12 MCT:1000295 dihydrophaseic acid content (+)
13 MCT:1000296 phaseic acid content (+)
14 MCT:1000297 abscisic acid- glucose ester content (+)
15 MCT:1000445 carbon dioxide content (+)
16 TO:0000019 seedling height (+)
17 TO:0000071 anthocyanin content (+)
18 TO:0000136 relative water content (+)
19 TO:0000207 plant height (+)
20 TO:0000280 seedling vigor (+)
21 TO:0000291 carbohydrate content (+)
22 TO:0000293 chlorophyll-a content (+)
23 TO:0000295 chlorophyll-b content (+)
24 TO:0000300 glucose content (+)
25 TO:0000328 sucrose content (+)
26 TO:0000430 germination rate (+)
27 TO:0000455 seed set percent (+)
28 TO:0000528 total shoot elongation under submergence (+)
29 TO:0000571 shoot fresh weight (+)
30 TO:0000696 starch content (+)
31 TO:0002616 flowering time (+)
32 TO:0002661 seed maturation (+)
33 TO:0002667 abscisic acid content (+)
34 TO:0002712 stay green trait (+)
35 TO:0006005 fructose content (+)
36 TO:0010001 percent germination (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The submergence tolerance gene, SUB1A, delays leaf senescence under prolonged darkness through hormonal regulation in rice. Plant Physiology 2012:
PMID [23073696]

Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice. The Plant Cell 2011:23
PMID [21239643]

Jung Ki-Hong; Seo Young-Su; Walia Harkamal; Cao Peijian; Fukao Takeshi; Canlas Patrick E; Amonpant Fawn; Bailey-Serres Julia; Ronald Pamela C; The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors. Plant Physiology 2010:152
PMID [20107022]

Fukao Takeshi; Bailey-Serres Julia; Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice. Proceedings of The National Academy of Sciences of The United States of America 2008:105
PMID [18936491]

Fukao Takeshi; Xu Kenong; Ronald Pamela C; Bailey-Serres Julia; A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. The Plant Cell 2006:18
PMID [16816135]

Xu Kenong; Xu Xia; Fukao Takeshi; Canlas Patrick; Maghirang-Rodriguez Reycel; Heuer Sigrid; Ismail Abdelbagi M; Bailey-Serres Julia; Ronald Pamela C; Mackill David J; Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature 2006:442
PMID [16900200]

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India