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Searching for BAA83740
[ TRAB1 ] |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0000975 |
regulatory region DNA binding |
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2 |
GO:0001071 |
nucleic acid binding transcription factor activity |
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3 |
GO:0003677 |
DNA binding |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0006351 |
"transcription, DNA-dependent" |
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2 |
GO:0006355 |
"regulation of transcription, DNA-dependent" |
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3 |
GO:0009725 |
response to hormone stimulus |
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4 |
GO:0009737 |
response to abscisic acid stimulus |
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5 |
GO:0009738 |
abscisic acid mediated signaling pathway |
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Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007105 |
abscisic acid regimen |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000436 |
14 days post-anthesis stage |
(+) |
2 |
MCP:1000505 |
30 days post-anthesis stage |
(+) |
3 |
MCP:1000518 |
seedling development stage |
(+) |
4 |
PO:0001040 |
dry seed stage |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
S. No. |
Primary rice gene loci |
Interacting rice gene loci |
Experiment type |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
1 |
BAA04066 |
- |
--- |
BAA83740 |
- |
--- |
Protein-protein interaction analysis : Yeast two-hybrid analysis |
2 |
BAA04066 |
- |
--- |
BAA83740 |
- |
--- |
Transient co-expression analysis |
3 |
BAA83740 |
- |
--- |
BAA04066 |
- |
--- |
Transient co-expression analysis |
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Interaction type: protein-DNA
S. No. |
Primary rice gene loci |
Interacting rice gene loci |
Experiment type |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
Id |
Domain name/N or C term |
Bases
involved in interaction |
Reference point |
cis-elements [PLACE Id] |
1 |
BAA83740 |
- |
--- |
LOC_Os05g28210 |
- |
- - |
- |
S000299  |
Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA) |
2 |
BAA83740 |
- |
--- |
LOC_Os11g26790 |
- |
- - |
- |
S000007  |
Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA) |
3 |
BAA83740 |
- |
--- |
LOC_Os05g28210 |
- |
-179 to -124 |
TSS |
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Transient co-expression analysis |
4 |
BAA83740 |
- |
--- |
LOC_Os05g28210 |
- |
-179 to -124 |
TSS |
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Transient co-expression analysis |
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TSS - Transcriptional start site
TrSS - Translational start site |
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS |
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Related publications [Sorted by year] |
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1 |
Fang Jun; Chai Chenglin; Qian Qian; Li Chunlai; Tang Jiuyou; Sun Lei; Huang Zejun; Guo Xiaoli; Sun Changhui; Liu Min; Zhang Yan; Lu Qingtao; Wang Yiqin; Lu Congming; Han Bin; Chen Fan; Cheng Zhukuan; Chu Chengcai; Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice. The Plant journal : for cell and molecular biology 2008:54
PMID [18208525]
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2 |
Kagaya Yasuaki; Hobo Tokunori; Murata Michiharu; Ban Atushi; Hattori Tsukaho; Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. The Plant cell 2002:14
PMID [12468735]
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3 |
Hobo T; Kowyama Y; Hattori T; A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription. Proceedings of the National Academy of Sciences of the United States of America 1999:96
PMID [10611387]
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