Rice gene details
Searching for BAA83740 [ TRAB1 ]

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000975 regulatory region DNA binding  
2 GO:0001071 nucleic acid binding transcription factor activity  
3 GO:0003677 DNA binding  
Biological process
S. No. GO Id GO Description
1 GO:0006351 "transcription, DNA-dependent"  
2 GO:0006355 "regulation of transcription, DNA-dependent"  
3 GO:0009725 response to hormone stimulus  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0009738 abscisic acid mediated signaling pathway  
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000436 14 days post-anthesis stage (+)
2 MCP:1000505 30 days post-anthesis stage (+)
3 MCP:1000518 seedling development stage (+)
4 PO:0001040 dry seed stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (+)
2 PO:0000005 cultured plant cell (+)
3 PO:0009005 root (+)
4 PO:0009010 seed (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Amino acid involved in interaction
1 BAA04066 - --- BAA83740 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
2 BAA04066 - --- BAA83740 - --- Transient co-expression analysis
3 BAA83740 - --- BAA04066 - --- Transient co-expression analysis
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Bases
involved in interaction		 Reference point cis-elements [PLACE Id]
1 BAA83740 - --- LOC_Os05g28210 - - - - S000299 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
2 BAA83740 - --- LOC_Os11g26790 - - - - S000007 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
3 BAA83740 - --- LOC_Os05g28210 - -179 to -124 TSS Transient co-expression analysis
4 BAA83740 - --- LOC_Os05g28210 - -179 to -124 TSS Transient co-expression analysis
      TSS - Transcriptional start site
TrSS - Translational start site		 TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

1  Fang Jun; Chai Chenglin; Qian Qian; Li Chunlai; Tang Jiuyou; Sun Lei; Huang Zejun; Guo Xiaoli; Sun Changhui; Liu Min; Zhang Yan; Lu Qingtao; Wang Yiqin; Lu Congming; Han Bin; Chen Fan; Cheng Zhukuan; Chu Chengcai; Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice. The Plant journal : for cell and molecular biology 2008:54
PMID [18208525]


2  Kagaya Yasuaki; Hobo Tokunori; Murata Michiharu; Ban Atushi; Hattori Tsukaho; Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. The Plant cell 2002:14
PMID [12468735]


3  Hobo T; Kowyama Y; Hattori T; A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription. Proceedings of the National Academy of Sciences of the United States of America 1999:96
PMID [10611387]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India