Rice gene details
Searching for LOC_Os01g10840 [CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g10840.1 405 65 349 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
2 GO:0016301 kinase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009266 response to temperature stimulus  
3 GO:0009408 response to heat  
4 GO:0009409 response to cold  
5 GO:0009414 response to water deprivation  
6 GO:0009628 response to abiotic stimulus  
7 GO:0009633 drought tolerance  
8 GO:0009651 response to salt stress  
9 GO:0009741 response to brassinosteroid stimulus  
10 GO:0033554 cellular response to stress  
11 GO:0040007 growth  
12 GO:0042538 hyperosmotic salinity response  
13 GO:0048589 developmental growth  
14 GO:0048640 negative regulation of developmental growth  
15 GO:0006810 transport (RGAP)
16 GO:0009987 cellular process (RGAP)
17 GO:0009719 response to endogenous stimulus (RGAP)
18 GO:0008152 metabolic process (RGAP)
19 GO:0006464 protein modification process (RGAP)
20 GO:0007165 signal transduction (RGAP)
21 GO:0009653 anatomical structure morphogenesis (RGAP)
22 GO:0007275 multicellular organismal development (RGAP)
23 GO:0016049 cell growth (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (+)
5 EO:0007332 cold air temperature regimen (+)
6 MCE:1000063 epibrassinolide (+)
7 MCE:1000069 dessication/dehydration stress (+)
8 MCE:1000075 recovery treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN52 spikelet number
2 CQN44 panicle weight
3 CQN27 leaf senescence
4 AQAJ001 male fertility restoration
5 AQAV003 cold tolerance
6 AQBJ002 large vascular bundle number
7 CQAO10 1000-seed weight
8 CQAW4 penetrated root number
9 AQEE016 cracked grain percentage
10 CQAW3 root number
11 AQEN002 blast disease resistance
12 AQDX002 osmotic adjustment capacity
13 AQFJ007 panicle number
14 AQFE038 spikelet number
15 AQFE023 grain number
16 CQAJ19 grain number
17 AQCQ030 grain number
18 AQCQ010 grain number
19 AQDY014 tiller number
20 AQDY013 tiller number
21 AQDY006 panicle number
22 AQDY011 tiller number
23 AQDY004 panicle number
24 AQAW018 filled grain percentage
25 AQAW017 spikelet sterility
26 AQAW016 secondary branch
27 AQAW011 filled grain percentage
28 AQAW010 filled grain percentage
29 AQAW008 spikelet number
30 AQAW007 spikelet number
31 AQAW004 spikelet number
32 AQAW003 spikelet number
33 AQAW001 panicle number
34 AQDY007 panicle number
35 AQDY012 tiller number
36 AQCT001 blast disease resistance
37 CQI1 potassium concentration
38 AQDZ006 culm thickness
39 EQB0001 seed dormancy
40 AQE008 filled grain number
41 AQGS001 plant height
42 AQHJ005 seminal root length
43 AQAX011 carbohydrate content
44 AQAX003 carbohydrate content
45 AQAW039 filled grain percentage
46 AQAW036 secondary branch
47 AQAW032 filled grain percentage
48 AQAW030 spikelet number
49 AQAW029 spikelet number
50 AQAW024 spikelet number
51 AQAW023 spikelet number
52 AQF087 basic vegetative phase
53 AQF084 panicle tiller ratio
54 AQF056 anther length
55 AQFE004 days to heading
56 AQFE003 days to heading
57 AQFE002 days to heading
58 AQFE001 days to heading
59 AQBV007 tiller angle
60 AQBK030 spikelet number
61 AQBK024 plant height
62 CQN49 spikelet number
63 CQN3 soluble protein content
64 CQE3 plant height
65 CQE2 plant height
66 CQE6 specific leaf area
67 CQF2 soluble protein content
68 AQCW010 H2O2 content
69 AQCW002 chlorophyll content
70 AQDY009 panicle number
71 AQDY008 panicle number
72 AQDY005 panicle number
73 AQDY003 panicle number
74 CQN53 spikelet number
75 CQN45 panicle weight
76 CQN28 leaf senescence
77 CQW1 spikelet number
78 AQBI001 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000047 inflorescence 1-2cm stage (+)
2 MCP:1000048 inflorescence 3-8cm stage (+)
3 MCP:1000458 6 days post-anthesis stage (+)
4 MCP:1000489 3 days post-anthesis stage (+)
5 MCP:1000519 mature inflorescence stage (+)
6 PO:0007013 BO.03 late boot stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000096 first shoot internode (+)
2 PO:0000003 whole plant (+)
3 PO:0005052 plant callus (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009010 seed (+)
8 PO:0009025 vascular leaf (-)
9 PO:0009049 inflorescence (+)
10 PO:0020033 coleoptile (+)
11 PO:0020103 flag leaf (+)
12 PO:0020104 leaf sheath (+)
13 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000015 photochemical efficiency (+)
3 MCT:1000058 wilting ratio (+)
4 TO:0000207 plant height (+)
5 TO:0001007 coleoptile length (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Xu Peipei; Cai Weiming; RAN1 is involved in plant cold resistance and development in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24790113]


2  Koh Serry; Lee Sang-Choon; Kim Min-Kyung; Koh Jun Ho; Lee Sichul; An Gynheung; Choe Sunghwa; Kim Seong-Ryong; T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses. Plant Molecular Biology 2007:65
PMID [17690841]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India