Rice gene details
Searching for LOC_Os01g38680 [transporter family protein, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g38680.1 513 25 487 PF00083.16 Sugar_tr
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  -15
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009737 response to abscisic acid stimulus  
3 GO:0006810 transport (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005634 nucleus (RGAP)
3 GO:0005575 cellular_component (RGAP)
4 GO:0005773 vacuole (RGAP)
5 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)
2 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAD1 allelopathic effect
2 AQEO003 spikelet fertility
3 AQGC003 penetrated root number
4 AQCR001 grain yield
5 AQCS001 ultraviolet-b resistance
6 CQG1 adaxial stomatal frequency
7 AQD027 leaf drying
8 AQD024 leaf drying
9 AQEN001 blast disease resistance
10 AQFU004 head rice
11 AQED048 grain yield per plant
12 AQCU255 spikelet fertility
13 AQCU252 spikelet number
14 AQCU240 spikelet number
15 AQCU182 days to heading
16 AQCU120 days to heading
17 AQCU114 days to heading
18 AQCU070 leaf length
19 AQCU052 days to heading
20 CQX6 culm length
21 AQEY003 1000-seed weight
22 AQGI037 root dry weight
23 CQX21 internode length
24 CQN51 spikelet number
25 CQN5 soluble protein content
26 CQN43 panicle weight
27 CQN26 leaf senescence
28 AQCV031 chalkiness of endosperm
29 CQAO10 1000-seed weight
30 AQCT001 blast disease resistance
31 CQI1 potassium concentration
32 CQN49 spikelet number
33 CQN3 soluble protein content
34 CQE3 plant height
35 CQE2 plant height
36 CQE6 specific leaf area
37 CQF2 soluble protein content
38 AQCW010 H2O2 content
39 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0001012 G early unicellular microspore stage (+)
2 PO:0001059 J bicellular pollen stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009066 anther (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Oliver Sandra N; Dennis Elizabeth S; Dolferus Rudy; ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice. Plant & cell physiology 2007:48
PMID [17693452]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India