Rice gene details
Searching for LOC_Os02g07830 [OsHKT1;3 - Na+ transporter, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g07830.1 532 180 531 PF02386.8 TrkH
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -2
N22 Root FC
  3
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0006950 response to stress (RGAP)
4 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
Not found
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGB109 chalkiness of endosperm
2 AQGB108 chalkiness of endosperm
3 AQGB084 chalkiness of endosperm
4 AQBK012 days to heading
5 CQAA17 relative phosphorus distribution between shoot and root
6 CQAA16 relative phosphorus distribution between shoot and root
7 AQBK041 seed number
8 AQBK031 spikelet number
9 AQBK025 plant height
10 AQEF006 stigma exsertion
11 AQEF005 stigma exsertion
12 AQEF003 stigma exsertion
13 AQBK028 plant height
14 AQEI114 leaf senescence
15 AQED001 days to heading
16 CQAS26 yield
17 AQDR009 1000-seed weight
18 AQE024 grain yield per plant
19 AQE001 days to flower
20 AQCU062 plant height
21 CQN31 leaf senescence
22 CQN56 spikelet number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Liu Citao; Mao Bigang; Ou Shujun; Wang Wei; Liu Linchuan; Wu Yanbin; Chu Chengcai; Wang Xiping; OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice. Plant molecular biology 2014:84
PMID [23918260]


2  Schmidt Romy; Schippers Jos H M; Welker Annelie; Mieulet Delphine; Guiderdoni Emmanuel; Mueller-Roeber Bernd; Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica. AOB Plants 2012:2012
PMID [22616023]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India