Rice gene details
Searching for LOC_Os03g01700 [expressed protein ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g01700.1 473 17 418 PF03600.8 CitMHS
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -7
N22 Root FC
  -10
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  -3
IR64 Root FC
  -6

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010038 response to metal ion  
2 GO:0046686 response to cadmium ion  
3 GO:0046688 response to copper ion  
4 GO:0006810 transport (RGAP)
5 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005623 cell (RGAP)
2 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007223 cadmium chloride (+)
2 EO:0007527 cupric sulfate (+)
3 MCE:1000301 sodium silicate (Na2SiO3) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAE2 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0020039 leaf lamina (-)
3 PO:0020104 leaf sheath (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Kim Yoon-Ha; Khan Abdul Latif; Kim Duk-Hwan; Lee Seung-Yeol; Kim Kyung-Min; Waqas Muhammad; Jung Hee-Young; Shin Jae-Ho; Kim Jong-Guk; Lee In-Jung; Silicon mitigates heavy metal stress by regulating P-type heavy metal ATPases, Oryza sativa low silicon genes, and endogenous phytohormones. BMC plant biology 2014:14
PMID [24405887]


2  Yamaji Naoki; Mitatni Namiki; Ma Jian Feng; A transporter regulating silicon distribution in rice shoots. The Plant Cell 2008:20
PMID [18515498]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India