Rice gene details
Searching for LOC_Os03g06654 [flavin monooxygenase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g06654.1 422 27 408 PF07992.6 Pyr_redox_2
2 LOC_Os03g06654.2 422 27 408 PF07992.6 Pyr_redox_2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -3
N22 Root FC
  2
IR64 Flag-leaf FC
  5
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0005488 binding (RGAP)
3 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000201 ethylene glycol tetraacetic acid (EGTA) (+)
2 MCE:1000347 alginate oligosaccharide (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-581 IAA biosynthesis I

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFW081 plant height
2 CQA6 reproductive growth time
3 CQA5 vegetative growth time
4 CQA4 days to heading
5 AQFU015 amylose content
6 AQGA007 amylose content
7 AQR012 deep root dry weight
8 CQAI15 tiller number
9 AQEA032 plant height
10 AQEA033 plant height
11 AQEA031 plant height
12 AQBC090 leaf width
13 AQBC091 leaf width
14 AQBC011 plant height
15 AQBC010 plant height
16 CQP3 days to heading
17 CQAS38 seed number
18 CQAS37 spikelet number
19 CQAS34 seed number
20 CQAS36 1000-seed weight
21 CQAS33 spikelet density
22 CQAS32 spikelet number
23 AQEI130 leaf senescence
24 AQEI108 leaf senescence
25 AQFC001 elongation ability
26 CQE15 chlorophyll content
27 CQAR8 spikelet density
28 CQAR7 tiller number
29 AQDQ027 panicle length
30 AQDQ026 plant height
31 AQDQ025 plant height
32 AQDQ024 plant height
33 AQCN005 days to heading
34 CQAX17 plant height
35 CQAX32 plant height
36 AQEN003 blast disease resistance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Zhang Yunhong; Yin Heng; Zhao Xiaoming; Wang Wenxia; Du Yuguang; He Ailing; Sun Kegang; The promoting effects of alginate oligosaccharides on root development in Oryza sativa L. mediated by auxin signaling. Carbohydrate polymers 2014:113
PMID [25256506]


2  Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India