Rice gene details
Searching for LOC_Os03g13390 [oxidoreductase, aldo/keto reductase family protein, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g13390.2 319 10 291 PF00248.13 Aldo_ket_red
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
 
N22 Root FC
 
IR64 Flag-leaf FC
 
IR64InfloresenceFC
 
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010039 response to iron ion  
2 GO:0010106 cellular response to iron ion starvation  
3 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000143 iron deficiency treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEI052 leaf senescence
2 AQEI065 leaf senescence
3 AQEI131 leaf senescence
4 AQFJ061 grain yield per plant
5 AQCK007 days to heading
6 CQE16 days to heading
7 AQCI008 phosphorus sensitivity
8 AQCV024 chalkiness of endosperm
9 AQDQ028 panicle length
10 AQDQ029 panicle length
11 AQAC032 total amylase activity
12 AQAG009 tiller number
13 AQEX008 root length
14 AQGI001 root dry weight
15 AQGI011 root dry weight
16 AQGI110 biomass yield
17 AQGI111 biomass yield
18 AQAL004 deep root dry weight
19 AQAL010 deep root to shoot ratio
20 AQGC006 penetrated root number
21 AQGC012 penetrated root number
22 AQGC015 root penetration index
23 AQDL005 stomatal closure time
24 AQCO005 spikelet fertility
25 AQCO115 spikelet fertility
26 AQCO118 spikelet fertility
27 AQCP005 spikelet fertility
28 AQGC021 root penetration index
29 AQBA010 brown planthopper resistance
30 AQBA011 brown planthopper resistance
31 AQBA014 brown planthopper resistance
32 AQW007 brown planthopper resistance
33 AQDI004 hybrid incompatibilty
34 AQDK007 grain yield
35 AQCU106 spikelet fertility
36 AQEE021 crushed grain percentage
37 CQX11 panicle length
38 AQDL002 stomatal resistance
39 AQFU015 amylose content
40 CQAS38 seed number
41 CQAS37 spikelet number
42 CQAS34 seed number
43 CQAS36 1000-seed weight
44 CQAS33 spikelet density
45 CQAS32 spikelet number
46 AQFC001 elongation ability
47 CQAR8 spikelet density
48 CQAR7 tiller number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Pereira Margarida P; Santos Carla; Gomes Ana; Vasconcelos Marta W; Cultivar variability of iron uptake mechanisms in rice (Oryza sativa L.). Plant physiology and biochemistry : PPB / Societe francaise de physiologie vegetale 2014:85C
PMID [25394797]


2  Ogo Yuko; Itai Reiko Nakanishi; Nakanishi Hiromi; Kobayashi Takanori; Takahashi Michiko; Mori Satoshi; Nishizawa Naoko K; The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions. The Plant Journal 2007:51
PMID [17559517]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India