Rice gene details
Searching for LOC_Os03g32314 [allene oxide cyclase 4, chloroplast precursor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g32314.1 241 61 238 PF06351.3 Allene_ox_cyc
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -4
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009607 response to biotic stimulus (RGAP)
2 GO:0008152 metabolic process (RGAP)
3 GO:0006950 response to stress (RGAP)
4 GO:0009628 response to abiotic stimulus (RGAP)
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0009987 cellular process (RGAP)
7 GO:0006629 lipid metabolic process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005773 vacuole (RGAP)
3 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007198 water environment (+)
2 EO:0007235 silicon nutrient regimen (+)
3 EO:0007373 mechanical damage (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-842 starch degradation

QTL details
S. No. QTL Id QTL Associated Trait
1 AQF008 seed dormancy
2 AQF026 seed dormancy
3 AQF043 awn length
4 AQF060 anther length
5 CQAH11 seed dormancy
6 CQAH12 seed dormancy
7 AQDY056 panicle length
8 AQDY058 panicle length
9 AQGJ020 leaf nitrogen content
10 AQHE004 root length
11 DQC15 penetrated to total root ratio
12 DQC8 penetrated root number
13 AQDY054 panicle length
14 AQFE071 100-grain weight
15 AQFE072 100-grain weight
16 AQFE073 100-grain weight
17 CQE18 yield
18 AQDY051 culm length
19 AQED021 panicle length
20 AQED022 panicle length
21 AQBG008 white-backed planthopper resistance
22 CQAS27 plant height
23 AQFA007 grain length
24 AQFA014 grain length to width ratio
25 CQE17 seed dormancy
26 CQE26 carbon content
27 CQE27 grain number
28 CQF5 soluble protein content
29 AQCK007 days to heading
30 CQE16 days to heading
31 AQAL004 deep root dry weight
32 AQAL010 deep root to shoot ratio
33 AQGC006 penetrated root number
34 AQGC012 penetrated root number
35 AQGC015 root penetration index
36 AQDL005 stomatal closure time
37 AQCU106 spikelet fertility
38 AQHP079 drought tolerance
39 AQHQ003 days to flower
40 CQAW9 root number
41 AQDV003 biomass yield
42 AQDV018 harvest index
43 AQDV043 plant height
44 AQEP003 seedling vigor
45 AQEP004 seedling vigor
46 AQFA006 cooked kernel elongation
47 DQE37 relative growth rate
48 CQE19 specific leaf area

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Kim Yoon-Ha; Khan Abdul Latif; Waqas Muhammad; Jeong Hee-Jeong; Kim Duk-Hwan; Shin Jeong Sheop; Kim Jong-Guk; Yeon Myung-Hun; Lee In-Jung; Regulation of jasmonic acid biosynthesis by silicon application during physical injury to Oryza sativa L. Journal of plant research 2014:127
PMID [24840865]


2  Yoshii Motoyasu; Yamazaki Muneo; Rakwal Randeep; Kishi-Kaboshi Mitsuko; Miyao Akio; Hirochika Hirohiko; The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling. The Plant Journal 2010:61
PMID [20015061]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India