Rice gene details
Searching for LOC_Os03g60560 [ZOS3-21 - C2H2 zinc finger protein, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g60560.1 171 109 131 PF00096.18 zf-C2H2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  6
N22 Root FC
  -9
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  29
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
3 GO:0003676 nucleic acid binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009651 response to salt stress  
3 GO:0009737 response to abscisic acid stimulus  
4 GO:0008150 biological_process (RGAP)
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005622 intracellular (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007080 jasmonic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007198 water environment (+)
5 EO:0007332 cold air temperature regimen (+)
6 MCE:1000075 recovery treatment (+)
7 MCE:1000078 potassium chloride regimen (KCl) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE26 carbon content
2 CQE27 grain number
3 CQF5 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000520 young inflorescence stage (+)
2 PO:0001053 3 leaf fully expanded (+)
3 PO:0007115 LP.04 four leaves visible (+)
4 PO:0007616 4 anthesis (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000315 second leaf from base (+)
2 PO:0000003 whole plant (+)
3 PO:0000005 cultured plant cell (+)
4 PO:0000006 plant protoplast (+)
5 PO:0008037 seedling (+)
6 PO:0009005 root (+)
7 PO:0009025 vascular leaf (+)
8 PO:0009047 stem (+)
9 PO:0009049 inflorescence (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000034 superoxide dismutase (SOD) activity (+)
2 MCT:1000044 ascorbate peroxidase activity (APX) (+)
3 MCT:1000057 relative fresh weight (+)
4 TO:0000085 leaf rolling (+)
5 TO:0000280 seedling vigor (+)
6 TO:0000357 growth and development trait (+)
7 TO:0000495 chlorophyll content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Zhang Hong; Ni Lan; Liu Yanpei; Wang Yunfei; Zhang Aying; Tan Mingpu; Jiang Mingyi; The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice. Journal of integrative plant biology 2012:54
PMID [22693960]


2  Yoshii Motoyasu; Yamazaki Muneo; Rakwal Randeep; Kishi-Kaboshi Mitsuko; Miyao Akio; Hirochika Hirohiko; The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling. The Plant Journal 2010:61
PMID [20015061]


3  Huang Ji; Yang Xia; Wang Mei-Mei; Tang Hai-Juan; Ding Ling-Yun; Shen Yin; Zhang Hong-Sheng; A novel rice C2H2-type zinc finger protein lacking DLN-box/EAR-motif plays a role in salt tolerance. Biochimica Et Biophysica Acta 2007:1769
PMID [17434609]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India