Rice gene details
Searching for LOC_Os04g48850 [aminotransferase, classes I and II, domain containing protein, expressed ]

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0010106 cellular response to iron ion starvation  
3 GO:0050896 response to stimulus  
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0006950 response to stress (RGAP)
7 GO:0009719 response to endogenous stimulus (RGAP)
8 GO:0009605 response to external stimulus (RGAP)
9 GO:0009628 response to abiotic stimulus (RGAP)
10 GO:0008219 cell death (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 EO:0007279 Chilo suppressalis (+)
3 MCE:1000143 iron deficiency treatment (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 GLYCOLYSIS glycolysis I
2 P1-PWY salvage pathways of purine and pyrimidine nucleotides

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD023 hull color
8 AQGD025 hull color
9 AQGD027 hull color
10 CQX13 panicle length
11 CQX16 internode length
12 AQFA016 grain length to width ratio
13 CQAP2 scent
14 CQAX33 plant height
15 AQCU126 plant height
16 AQCU150 panicle length
17 AQCU162 spikelet number
18 AQCU223 leaf width
19 AQFF047 panicle number
20 AQFF052 panicle number
21 CQAS44 panicle number
22 CQAS46 spikelet density
23 CQAS47 seed number
24 CQAS49 1000-seed weight
25 CQAS51 seed number
26 CQAX21 plant height
27 AQCQ003 grain yield per plant
28 CQB10 grain number
29 CQB9 plant height
30 CQAC2 blast disease resistance
31 AQCF031 spikelet fertility
32 AQDO008 invitro regeneration ability
33 AQFF031 spikelet number
34 AQFF036 spikelet number
35 CQAW13 tiller number
36 AQFE031 grain number
37 AQFE059 seed set percent
38 AQFE060 seed set percent
39 AQFE061 seed set percent
40 CQE33 shoot elongation rate
41 AQAI037 leaf area to spikelet number ratio
42 AQEX003 plant height
43 AQGI202 total biomass yield
44 AQFB001 seed dormancy
45 AQFB002 seed dormancy
46 AQFB003 seed dormancy
47 CQN33 leaf senescence
48 CQN34 leaf senescence
49 CQG4 leaf rolling time
50 CQN13 nadh-dependent glutamate synthase content
51 AQA017 root length
52 AQG010 panicle number
53 AQG011 spikelet number
54 AQG012 spikelet number
55 AQGB020 grain length
56 AQGB021 grain length
57 AQGB022 grain length
58 AQGB023 grain length
59 AQGB024 grain length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 PO:0000003 whole plant (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009047 stem (+)
6 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]


2  Zhang Haiwen; Zhang Jianfei; Quan Ruidang; Pan Xiaowu; Wan Liyun; Huang Rongfeng; EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance. Planta 2013:
PMID [23420309]


3  Lu Jing; Ju Hongping; Zhou Guoxin; Zhu Chuanshu; Erb Matthias; Wang Xiaopeng; Wang Peng; Lou Yonggen; An EAR-motif-containing ERF transcription factor affects herbivore-induced signaling, defense and resistance in rice. The Plant Journal 2011:
PMID [21831212]


4  Wan Liyun; Zhang Jianfei; Zhang Haiwen; Zhang Zhijin; Quan Ruidang; Zhou Shirong; Huang Rongfeng; Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice. Plos One 2011:6
PMID [21966459]


5  Wu Jiaojiao; Wang Chuang; Zheng Luqing; Wang Lu; Chen Yunlong; Whelan James; Shou Huixia; Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa. Journal of Experimental Botany 2011:62
PMID [21112958]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India