Rice gene details
Searching for LOC_Os04g49510 [CAMK_CAMK_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed ]

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0016301 kinase activity (RGAP)
3 GO:0005488 binding (RGAP)
4 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009414 response to water deprivation  
3 GO:0009628 response to abiotic stimulus  
4 GO:0009651 response to salt stress  
5 GO:0009725 response to hormone stimulus  
6 GO:0009733 response to auxin stimulus  
7 GO:0009735 response to cytokinin stimulus  
8 GO:0009737 response to abscisic acid stimulus  
9 GO:0009739 response to gibberellin stimulus  
10 GO:0042538 hyperosmotic salinity response  
11 GO:0009058 biosynthetic process (RGAP)
12 GO:0006464 protein modification process (RGAP)
13 GO:0009719 response to endogenous stimulus (RGAP)
14 GO:0007165 signal transduction (RGAP)
15 GO:0006810 transport (RGAP)
16 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005829 cytosol (RGAP)
3 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007162 continuous light regimen (+)
4 EO:0007198 water environment (+)
5 EO:0007290 kinetin regimen (+)
6 EO:0007332 cold air temperature regimen (+)
7 EO:0007404 drought environment (+)
8 MCE:1000075 recovery treatment (+)
9 MCE:1000285 recovery treatment from salt stress (+)
10 MCE:1000286 recovery treatment from drought stress (+)
11 MCE:1000287 recovery treatment from cold stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD023 hull color
8 AQGD025 hull color
9 AQGD027 hull color
10 AQFA016 grain length to width ratio
11 CQAP2 scent
12 CQAX33 plant height
13 AQCU126 plant height
14 AQCU150 panicle length
15 AQCU162 spikelet number
16 AQCU223 leaf width
17 AQFF047 panicle number
18 AQFF052 panicle number
19 CQAS44 panicle number
20 CQAS46 spikelet density
21 CQAS47 seed number
22 CQAS49 1000-seed weight
23 CQAS51 seed number
24 CQAX21 plant height
25 AQCQ003 grain yield per plant
26 CQB10 grain number
27 CQB9 plant height
28 CQAC2 blast disease resistance
29 AQCF031 spikelet fertility
30 AQDO008 invitro regeneration ability
31 AQFF031 spikelet number
32 AQFF036 spikelet number
33 CQAW13 tiller number
34 AQFE031 grain number
35 AQFE059 seed set percent
36 AQFE060 seed set percent
37 AQFE061 seed set percent
38 AQAI037 leaf area to spikelet number ratio
39 AQEX003 plant height
40 AQGI202 total biomass yield
41 AQFB001 seed dormancy
42 AQFB002 seed dormancy
43 AQFB003 seed dormancy
44 CQG4 leaf rolling time
45 CQN13 nadh-dependent glutamate synthase content
46 AQA017 root length
47 AQG010 panicle number
48 AQG011 spikelet number
49 AQG012 spikelet number
50 CQO3 cold tolerance
51 CQO4 anther length
52 AQDO004 invitro regeneration ability
53 CQN32 leaf senescence
54 AQAX012 carbohydrate content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000166 5-10 days post-anthesis stage (+)
2 MCP:1000518 seedling development stage (+)
3 MCP:1000521 mature plant stage (+)
4 PO:0007041 inflorescence emergence from flag leaf sheath (+)
5 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000085 lower shoot (+)
2 MCP:1000279 youngest leaf (+)
3 MCP:1000418 root peripheral vascular bundles (+)
4 MCP:1000422 cortical parenchyma cell (-)
5 PO:0000003 whole plant (+)
6 PO:0000016 lateral root primordium (+)
7 PO:0000025 root tip (+)
8 PO:0000252 endodermis (+)
9 PO:0004724 hypocotyl-root junction (+)
10 PO:0005020 vascular bundle (+)
11 PO:0005352 xylem (+)
12 PO:0005417 phloem (+)
13 PO:0005421 parenchyma (+)
14 PO:0005427 sclerenchyma (+)
15 PO:0005679 epidermis (+)
16 PO:0005772 exodermis (+)
17 PO:0006085 root meristem (+)
18 PO:0008035 plerome (+)
19 PO:0008037 seedling (+)
20 PO:0009005 root (+)
21 PO:0009006 shoot system (+)
22 PO:0009010 seed (+)
23 PO:0009025 vascular leaf (+)
24 PO:0009047 stem (+)
25 PO:0009049 inflorescence (+)
26 PO:0009051 spikelet (+)
27 PO:0020039 leaf lamina (+)
28 PO:0020124 root stele (+)
29 PO:0025034 leaf (+)
30 PO:0025181 root elongation zone (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000015 photochemical efficiency (+)
3 MCT:1000058 wilting ratio (+)
4 TO:0000085 leaf rolling (+)
5 TO:0000303 cold tolerance (+)
6 TO:0000515 relative growth rate (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Asano Takayuki; Hakata Makoto; Nakamura Hidemitsu; Aoki Naohiro; Komatsu Setsuko; Ichikawa Hiroaki; Hirochika Hirohiko; Ohsugi Ryu; Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice. Plant Molecular Biology 2011:75
PMID [21136139]


2  Gothandam Kodiveri Muthukalianan; Nalini Easwaran; Karthikeyan Sivashanmugam; Shin Jeong Sheop; OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance. Plant Molecular Biology 2010:72
PMID [19830390]


3  Ye Shuifeng; Wang Lei; Xie Weibo; Wan Bingliang; Li Xianghua; Lin Yongjun; Expression profile of calcium-dependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa L. ssp. indica). Plant Molecular Biology 2009:70
PMID [19263224]


4  Gao Shumei; Zhang Haiwen; Tian Yun; Li Fang; Zhang Zhijin; Lu Xiangyang; Chen Xiaoliang; Huang Rongfeng; Expression of TERF1 in rice regulates expression of stress-responsive genes and enhances tolerance to drought and high-salinity. Plant cell reports 2008:27
PMID [18777179]


5  Wan Bingliang; Lin Yongjun; Mou Tongmin; Expression of rice Ca(2+)-dependent protein kinases (CDPKs) genes under different environmental stresses. FEBS Letters 2007:581
PMID [17336300]


6  Saijo Y; Kinoshita N; Ishiyama K; Hata S; Kyozuka J; Hayakawa T; Nakamura T; Shimamoto K; Yamaya T; Izui K; A Ca(2+)-dependent protein kinase that endows rice plants with cold- and salt-stress tolerance functions in vascular bundles. Plant & Cell Physiology 2001:42
PMID [11726707]


7  Saijo Y; Hata S; Kyozuka J; Shimamoto K; Izui K; Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants. The Plant Journal 2000:23
PMID [10929125]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India