Rice gene details
Searching for LOC_Os04g57490 [cysteine protease, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g57490.1 491 84 127 PF08246.4 Inhibitor_I29
2 LOC_Os04g57490.1 491 155 374 PF00112.15 Peptidase_C1
3 LOC_Os04g57490.1 491 406 454 PF00396.10 Granulin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -4
N22 Root FC
  -14
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  4
IR64 Root FC
  5

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
2 GO:0016787 hydrolase activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0006950 response to stress (RGAP)
3 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
Not found
1 GO:0005829 cytosol (RGAP)
2 GO:0005773 vacuole (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007404 drought environment (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 LIPASYN-PWY phospholipases
2 PWY-735 jasmonic acid biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK014 days to heading
2 AQGD023 hull color
3 AQGD025 hull color
4 AQGD027 hull color
5 CQAX21 plant height
6 CQN32 leaf senescence
7 AQBY002 root length
8 AQP006 primary branch
9 AQP010 spikelet number
10 CQB8 grain number
11 AQDQ030 panicle number
12 AQDQ034 seed weight
13 AQEO011 seed length
14 AQEO021 100-seed weight
15 CQAW11 root number
16 AQCF005 spikelet number
17 AQCF006 grain yield
18 AQDQ033 seed weight
19 AQDQ035 seed weight
20 AQDQ036 grain yield per plant
21 AQDQ037 grain yield per plant
22 AQDQ039 plant height
23 AQFF038 spikelet sterility
24 CQH21 root pulling force
25 AQFU010 rice bran percentage
26 AQEI057 leaf senescence
27 AQEI058 leaf senescence
28 AQO039 root thickness
29 AQGI113 biomass yield
30 AQBA005 brown planthopper resistance
31 AQBC044 tiller number
32 AQBE028 tiller number
33 AQBE029 tiller number
34 AQBE061 tiller number
35 DQE4 leaf drying
36 DQE5 leaf drying
37 CQE35 culm thickness

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000204 5 days post-anthesis stage (+)
2 MCP:1000376 15 days post-anthesis stage (+)
3 MCP:1000454 10 days post-anthesis stage (+)
4 MCP:1000473 20 days post-anthesis stage (+)
5 MCP:1000505 30 days post-anthesis stage (+)
6 MCP:1000506 40 days post-anthesis stage (+)
7 MCP:1000507 50 days post-anthesis stage (+)
8 PO:0007130 B reproductive growth (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009010 seed (+)
2 PO:0009046 flower (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Amino acid involved in interaction
1 LOC_Os11g09280 - --- LOC_Os04g57490 - 155-454 Protein-protein interaction analysis : Yeast two-hybrid analysis
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Guo Changkui; Ge Xiaochun; Ma Hong; The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages. Plant molecular biology 2013:82
PMID [23686450]


2  Kim Yeon Jeong; Yeu Song Yion; Park Bong Soo; Koh Hee-Jong; Song Jong Tae; Seo Hak Soo; Protein Disulfide Isomerase-Like Protein 1-1 Controls Endosperm Development through Regulation of the Amount and Composition of Seed Proteins in Rice. Plos One 2012:7
PMID [22970232]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India