Rice gene details Home Browse Search Contact Us Feedback Links Searching for LOC_Os06g05110 [superoxide dismutase, chloroplast, putative, expressed ] Basic information [Pfam DB] Graphical representation of the protein domains S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name 1 LOC_Os06g05110.1 256 42 127 PF00081.14 Sod_Fe_N 2 LOC_Os06g05110.1 256 132 238 PF02777.10 Sod_Fe_C 3 LOC_Os06g05110.3 210 42 127 PF00081.14 Sod_Fe_N 4 LOC_Os06g05110.3 210 132 172 PF02777.10 Sod_Fe_C   The basic information is from RGAP and Pfam/InterPro databases Gene model (download) IR64 N22 Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change] N22 Flag-leaf FC   -1 N22InfloresenceFC   1 N22 Root FC   3 IR64 Flag-leaf FC   3 IR64InfloresenceFC   1 IR64 Root FC   2 Functional details Molecular Function S. No. GO Id GO Description 1 GO:0003824 catalytic activity (RGAP) Biological process S. No. GO Id GO Description 1 GO:0010272 response to silver ion   2 GO:0008152 metabolic process (RGAP) 3 GO:0006950 response to stress (RGAP) 4 GO:0009987 cellular process (RGAP) Cellular component S. No. GO Id GO Description 1 GO:0005622 intracellular (RGAP) 2 GO:0009536 plastid (RGAP) Environment details S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity 1 MCE:1000091 methyl viologen/paraquat (+) 2 MCE:1000340 silver nanoparticles (+) Metabolic Pathway details S. No. Pathway Id Pathway Description 1 DETOX1-PWY removal of superoxide radicals QTL details S. No. QTL Id QTL Associated Trait 1 CQAE17 grain number 2 AQGA003 amylose content 3 AQGA008 amylose content 4 AQGA022 gel consistency 5 AQGA026 gel consistency 6 CQX3 days to heading 7 AQCQ024 grain yield per plant 8 AQCQ040 1000-seed weight 9 AQFX001 days to heading 10 AQCV026 chalkiness of endosperm 11 AQCV027 chalkiness of endosperm 12 AQCV038 chalkiness of endosperm 13 AQCI009 phosphorus sensitivity 14 CQE43 ratooning ability 15 AQGA001 amylose content 16 AQGA015 amylose content 17 AQGA030 gelatinization temperature 18 AQGA038 gelatinization temperature 19 AQFU006 head rice 20 AQFU016 amylose content 21 AQFU018 alkali digestion 22 AQFU022 protein content 23 CQI6 sodium concentration 24 AQCU128 plant height 25 AQFR015 seedling vigor 26 AQFR045 seedling vigor 27 AQFV031 seedling vigor 28 AQCB005 spikelet number 29 AQEX005 plant height 30 AQGI054 root dry weight 31 AQHR041 plant height 32 AQHR042 plant height 33 CQAL13 grain length 34 CQAL22 grain core percent white 35 AQCY005 panicle number 36 AQCY026 panicle number Plant developmental stage / tissue details Plant development stage S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 MCP:1000518 seedling development stage (+) Plant tissue/organ S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 PO:0009005 root (+) 2 PO:0009006 shoot system (+) Others S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity Not found Trait details Not found Physical interaction details Interaction type: protein-protein Not found Interaction type: protein-DNA Not found Related publications [Sorted by year] 1  Nair Prakash M Gopalakrishnan; Chung Ill Min; Physiological and molecular level effects of silver nanoparticles exposure in rice (Oryza sativa L.) seedlings. Chemosphere 2014:112 PMID [25048895] 2  Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice. The Plant Cell 2011:23 PMID [21239643] Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India