Rice gene details
Searching for LOC_Os06g06090 [CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g06090.1 399 72 352 PF00069.17 Pkinase
2 LOC_Os06g06090.2 351 72 342 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  -3
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0004672 protein kinase activity  
2 GO:0005515 protein binding (RGAP)
3 GO:0016301 kinase activity (RGAP)
4 GO:0004871 signal transducer activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0002238 response to molecule of fungal origin  
2 GO:0006468 protein phosphorylation  
3 GO:0009409 response to cold  
4 GO:0009611 response to wounding  
5 GO:0009651 response to salt stress  
6 GO:0009723 response to ethylene stimulus  
7 GO:0009737 response to abscisic acid stimulus  
8 GO:0009751 response to salicylic acid stimulus  
9 GO:0009753 response to jasmonic acid stimulus  
10 GO:0042542 response to hydrogen peroxide  
11 GO:0046898 response to cycloheximide  
12 GO:0051592 response to calcium ion  
13 GO:0008152 metabolic process (RGAP)
14 GO:0009987 cellular process (RGAP)
15 GO:0006950 response to stress (RGAP)
16 GO:0009628 response to abiotic stimulus (RGAP)
17 GO:0007275 multicellular organismal development (RGAP)
18 GO:0009607 response to biotic stimulus (RGAP)
19 GO:0009719 response to endogenous stimulus (RGAP)
20 GO:0009908 flower development (RGAP)
21 GO:0009058 biosynthetic process (RGAP)
22 GO:0019748 secondary metabolic process (RGAP)
23 GO:0007165 signal transduction (RGAP)
24 GO:0006464 protein modification process (RGAP)
25 GO:0009791 post-embryonic development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005737 cytoplasm (RGAP)
3 GO:0005794 Golgi apparatus (RGAP)
4 GO:0005856 cytoskeleton (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007080 jasmonic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007129 UV-C light regimen (-)
5 EO:0007162 continuous light regimen (+)
6 EO:0007173 warm/hot temperature regimen (+)
7 EO:0007187 salicylic acid regimen (+)
8 EO:0007198 water environment (+)
9 EO:0007270 continuous dark (no light) regimen (+)
10 EO:0007279 Chilo suppressalis (+)
11 EO:0007332 cold air temperature regimen (+)
12 EO:0007373 mechanical damage (+)
13 EO:0007402 fungal elicitor (+)
14 EO:0007415 hydrogen peroxide (+)
15 MCE:1000013 ethephon (+)
16 MCE:1000037 sucrose (+)
17 MCE:1000038 cycloheximide (+)
18 MCE:1000039 cantharidin (+)
19 MCE:1000040 endothall (+)
20 MCE:1000041 okadaic acid (+)
21 MCE:1000042 sulfurdioxide (SO2) (+)
22 MCE:1000043 ozone regimen (+)
23 MCE:1000069 dessication/dehydration stress (+)
24 MCE:1000114 arsenite (+)
25 MCE:1000119 calcium chloride regimen (CaCl2) (+)
26 MCE:1000256 Magnaporthe oryzae isolates Che89 (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAE17 grain number
2 AQGA003 amylose content
3 AQGA008 amylose content
4 AQGA022 gel consistency
5 AQGA026 gel consistency
6 CQX3 days to heading
7 AQFX001 days to heading
8 AQCV026 chalkiness of endosperm
9 AQCV027 chalkiness of endosperm
10 AQCV038 chalkiness of endosperm
11 AQCI009 phosphorus sensitivity
12 CQE43 ratooning ability
13 AQFU006 head rice
14 AQFU016 amylose content
15 AQFU018 alkali digestion
16 AQFU022 protein content
17 CQI6 sodium concentration
18 AQCY005 panicle number
19 AQCY026 panicle number
20 AQCQ017 1000-seed weight
21 AQY011 days to heading
22 AQY015 days to heading
23 CQAL10 chalkiness of endosperm
24 CQAL18 grain length to width ratio
25 CQAW18 tiller number
26 AQEN005 blast disease resistance
27 CQAW19 root number
28 AQEJ010 leaf length
29 AQEJ011 leaf length
30 AQEJ012 leaf width
31 AQEJ013 leaf width
32 AQEJ014 leaf length to width ratio
33 AQEJ015 leaf length to width ratio
34 AQEJ016 leaf length to width ratio
35 AQCU188 days to heading
36 AQFW092 leaf length
37 AQCF008 filled grain number
38 AQCF009 spikelet number
39 AQCF010 grain yield
40 AQCF019 filled grain number
41 AQCF020 spikelet number
42 AQCF021 grain yield
43 AQCF036 filled grain number
44 AQCF037 spikelet number
45 AQCF038 spikelet fertility
46 AQCF039 1000-seed weight
47 AQCF040 grain yield
48 AQGJ005 blast disease resistance
49 AQGJ023 blast disease resistance
50 AQEJ026 leaf width
51 AQEJ028 leaf width
52 CQAF3 amylose content
53 CQAF5 gel consistency
54 AQHR045 plant height
55 AQHR046 plant height
56 AQAI048 large vascular bundle number to leaf area ratio
57 AQDY078 panicle length
58 AQDY082 panicle length
59 AQDY083 panicle length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000519 mature inflorescence stage (+)
3 PO:0001053 3 leaf fully expanded (+)
4 PO:0007013 BO.03 late boot stage (+)
5 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000315 second leaf from base (+)
2 PO:0000003 whole plant (+)
3 PO:0000006 plant protoplast (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009025 vascular leaf (+)
8 PO:0009042 prophyll (+)
9 PO:0009047 stem (+)
10 PO:0009049 inflorescence (+)
11 PO:0020103 flag leaf (+)
12 PO:0020104 leaf sheath (+)
13 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000034 superoxide dismutase (SOD) activity (+)
2 MCT:1000044 ascorbate peroxidase activity (APX) (+)
3 MCT:1000313 kinase activity (+)
4 TO:0000227 root length (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Bases
involved in interaction		 Reference point cis-elements [PLACE Id]
1 LOC_Os05g51830 - --- LOC_Os06g06090 - - - - Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
      TSS - Transcriptional start site
TrSS - Translational start site		 TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

1  Shi Ben; Ni Lan; Liu Yanpei; Zhang Aying; Tan Mingpu; Jiang Mingyi; OsDMI3-mediated activation of OsMPK1 regulates the activities of antioxidant enzymes in abscisic acid signalling in rice. Plant, cell & environment 2014:37
PMID [23777258]


2  Wen Feng; Qin Tingting; Wang Yao; Dong Wen; Zhang Aying; Tan Mingpu; Jiang Mingyi; OsHK3 is a crucial regulator of abscisic acid signaling involved in antioxidant defense in rice. Journal of integrative plant biology 2014:
PMID [24912543]


3  Wang Qi; Li Jiancai; Hu Lingfei; Zhang Tongfang; Zhang Guren; Lou Yonggen; OsMPK3 positively regulates the JA signaling pathway and plant resistance to a chewing herbivore in rice. Plant Cell Reports 2013:
PMID [23344857]


4  Ding Bo; Bellizzi Maria Del Rosario; Ning Yuese; Meyers Blake C; Wang Guo-Liang; HDT701, a Histone H4 Deacetylase, Negatively Regulates Plant Innate Immunity by Modulating Histone H4 Acetylation of Defense-Related Genes in Rice. The Plant Cell 2012:
PMID [22968716]


5  Zhang Hong; Ni Lan; Liu Yanpei; Wang Yunfei; Zhang Aying; Tan Mingpu; Jiang Mingyi; The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice. Journal of integrative plant biology 2012:54
PMID [22693960]


6  Rao Kudupudi Prabhakara; Vani Gubbala; Kumar Kundan; Wankhede Dhammaprakash Pandhari; Misra Mohit; Gupta Meetu; Sinha Alok Krishna; Arsenic stress activates MAP kinase in rice roots and leaves. Archives of Biochemistry and Biophysics 2010:
PMID [21081102]


7  Ge Liang-Fa; Chao Dai-Yin; Shi Min; Zhu Mei-Zhen; Gao Ji-Ping; Lin Hong-Xuan; Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes. Planta 2008:228
PMID [18365248]


8  Lee Mi-Ok; Cho Kyoungwon; Kim So-Hee; Jeong Seung-Hee; Kim Jung-A; Jung Young-Ho; Shim Jaekyung; Shibato Junko; Rakwal Randeep; Tamogami Shigeru; Kubo Akihiro; Agrawal Ganesh Kumar; Jwa Nam-Soo; Novel rice OsSIPK is a multiple stress responsive MAPK family member showing rhythmic expression at mRNA level. Planta 2008:227
PMID [18066586]


9  Katou Shinpei; Kuroda Katsushi; Seo Shigemi; Yanagawa Yuki; Tsuge Tomohiko; Yamazaki Muneo; Miyao Akio; Hirochika Hirohiko; Ohashi Yuko; A calmodulin-binding mitogen-activated protein kinase phosphatase is induced by wounding and regulates the activities of stress-related mitogen-activated protein kinases in rice. Plant & Cell Physiology 2007:48
PMID [17218330]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India