Rice gene details
Searching for LOC_Os06g39590 [OsIAA23 - Auxin-responsive Aux/IAA gene family member, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g39590.1 194 43 190 PF02309.8 AUX_IAA
2 LOC_Os06g39590.2 167 43 165 PF02309.8 AUX_IAA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -3
N22 Root FC
  -3
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  2
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009719 response to endogenous stimulus (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007080 jasmonic acid regimen (+)
5 EO:0007105 abscisic acid regimen (+)
6 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
7 EO:0007204 1-naphthaleneacetic acid (+)
8 EO:0007290 kinetin regimen (+)
9 EO:0007404 drought environment (+)
10 MCE:1000063 epibrassinolide (+)
11 MCE:1000173 cadmium nutrient regimen (+)
12 MCE:1000203 dark regimen (+)
13 MCE:1000245 2′-amino-3′-methoxyflavone (PD98059) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 AQX010 secondary branch
3 AQBK042 seed number
4 AQBK045 seed set percent
5 AQAP029 brown planthopper resistance
6 AQCU019 plant height
7 AQDZ008 culm thickness
8 AQEB003 1000-seed weight
9 AQEB007 1000-seed weight
10 AQEB012 1000-seed weight
11 AQDZ014 lodging incidence
12 AQFP014 culm length
13 AQFU019 alkali digestion
14 AQFU027 seed length to width ratio
15 AQCU085 panicle length
16 AQCU135 leaf length
17 AQCU143 leaf width
18 AQCU155 spikelet number
19 AQCU187 days to heading
20 AQFE064 seed set percent
21 AQGM011 panicle length
22 CQAJ14 yield
23 CQAS66 plant height
24 AQEI112 leaf senescence
25 AQEI139 leaf senescence
26 AQEI142 leaf senescence
27 AQEN006 blast disease resistance
28 AQEN014 blast disease resistance
29 AQHQ005 days to flower
30 AQHQ025 photoperiod sensitivity
31 CQAR20 spikelet number
32 CQAR21 spikelet density
33 CQAW20 penetrated root number
34 CQAX6 plant height
35 AQBS004 days to heading
36 AQBS033 spikelet number
37 CQE46 leaf height
38 AQGB034 grain width
39 CQAS72 spikelet density
40 CQAS76 spikelet number
41 CQAS77 seed number
42 CQF8 soluble protein content
43 AQAW028 spikelet number
44 AQBK006 spikelet number
45 CQC5 spikelet number
46 AQEA385 plant height
47 AQEA387 plant height
48 AQEA389 plant height
49 AQEA391 plant height
50 AQEA393 plant height
51 AQEA395 plant height
52 AQEA397 plant height
53 AQEL023 root number
54 AQDU002 cold tolerance
55 AQEE041 head rice
56 AQEE043 cracked grain percentage
57 AQEI066 leaf senescence
58 AQEI113 leaf senescence
59 AQFJ072 grain yield per plant
60 AQGP039 days to heading
61 AQGP083 grain yield
62 CQAA2 leaf rolloing tolerance
63 CQAE11 panicle number
64 CQAF10 gelatinization temperature
65 AQEM002 salt sensitivity
66 CQX19 internode length
67 AQDY085 culm length
68 AQDY102 panicle number
69 AQBM001 callus induction
70 AQAA005 root length
71 CQH24 penetrated root thickness
72 AQEP011 seedling vigor
73 AQDR141 grain yield per panicle
74 AQDR143 grain number
75 AQDS080 plant height
76 AQDS082 plant height
77 AQDS083 plant height
78 AQCV007 grain length
79 AQCV008 grain length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0005052 plant callus (+)
3 PO:0008037 seedling (+)
4 PO:0009005 root (+)
5 PO:0009006 shoot system (+)
6 PO:0009025 vascular leaf (+)
7 PO:0009046 flower (+)
8 PO:0020033 coleoptile (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79
PMID [24798203]


2  Zhao Heming; Ma Tengfei; Wang Xin; Deng Yingtian; Ma Haoli; Zhang Rongsheng; Zhao Jie; OsAUX1 controls lateral root initiation in rice (Oryza sativa L.). Plant, cell & environment 2014:
PMID [25311360]


3  Zhao Feng Yun; Hu Fan; Zhang Shi Yong; Wang Kai; Zhang Cheng Ren; Liu Tao; MAPKs regulate root growth by influencing auxin signaling and cell cycle-related gene expression in cadmium-stressed rice. Environmental Science and Pollution Research International 2013:
PMID [23430734]


4  Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]


5  Song Yaling; Wang Lei; Xiong Lizhong; Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments. Planta 2009:229
PMID [19034497]


6  Jain Mukesh; Kaur Navneet; Garg Rohini; Thakur Jitendra K; Tyagi Akhilesh K; Khurana Jitendra P; Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [16200395]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India