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Searching for LOC_Os06g51220
[HMG1/2, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os06g51220.2 |
158 |
42 |
111 |
PF00505.11 |
HMG_box |
2 |
LOC_Os06g51220.3 |
158 |
42 |
111 |
PF00505.11 |
HMG_box |
3 |
LOC_Os06g51220.4 |
158 |
42 |
111 |
PF00505.11 |
HMG_box |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Not found |
1 |
GO:0003677 |
DNA binding |
(RGAP) |
2 |
GO:0005198 |
structural molecule activity |
(RGAP) |
3 |
GO:0003682 |
chromatin binding |
(RGAP) |
4 |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
(RGAP) |
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Biological process
Not found |
1 |
GO:0016043 |
cellular component organization |
(RGAP) |
2 |
GO:0009987 |
cellular process |
(RGAP) |
3 |
GO:0009058 |
biosynthetic process |
(RGAP) |
4 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
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Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007024 |
aerobic environment |
(+) |
2 |
MCE:1000195 |
hypoxic environment |
(+) |
3 |
MCE:1000330 |
nitrogen flushing |
(+) |
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Metabolic Pathway details
QTL details
S. No. |
QTL Id |
QTL Associated Trait |
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1 |
CQE47 |
chlorophyll content |
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]
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