Rice gene details
Searching for LOC_Os07g15370 [metal transporter Nramp6, putative, expressed ]

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006826 iron ion transport  
2 GO:0006828 manganese ion transport  
3 GO:0009267 cellular response to starvation  
4 GO:0010042 response to manganese ion  
5 GO:0010106 cellular response to iron ion starvation  
6 GO:0015691 cadmium ion transport  
7 GO:0030001 metal ion transport  
8 GO:0034224 cellular response to zinc ion starvation  
9 GO:0046686 response to cadmium ion  
10 GO:0006810 transport (RGAP)
11 GO:0009987 cellular process (RGAP)
12 GO:0008150 biological_process (RGAP)
13 GO:0019725 cellular homeostasis (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane  
2 GO:0005886 plasma membrane (RGAP)
3 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007098 ferrous sulfate regimen (+)
2 EO:0007223 cadmium chloride (+)
3 EO:0007242 iron nutrient regimen (+)
4 EO:0007387 manganese nutrient regimen (+)
5 MCE:1000047 manganese chloride regimen (MnCl2) (+)
6 MCE:1000143 iron deficiency treatment (+)
7 MCE:1000162 copper deficiency treatment (+)
8 MCE:1000163 zinc deficiency treatment (+)
9 MCE:1000164 manganese deficiency treatment (+)
10 MCE:1000173 cadmium nutrient regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQN16 soluble protein content
5 CQN35 leaf senescence
6 CQN36 leaf senescence
7 CQAS81 days to maturity
8 AQED003 days to heading
9 AQEE007 colored grain percentage
10 AQEE010 colored grain percentage
11 CQAS91 yield
12 AQF068 anther length
13 CQAH33 seed dormancy
14 AQAX017 days to heading
15 AQAX018 days to heading
16 AQDY108 panicle length
17 AQGF001 seed dormancy
18 AQGF002 seed dormancy
19 AQGF003 seed dormancy
20 AQGF011 seed dormancy
21 AQGF012 seed dormancy
22 AQGF013 seed dormancy
23 CQAN12 days to heading
24 CQAN15 days to heading
25 CQAN3 sheath blight disease resistance
26 AQA024 root number
27 AQA026 root number
28 AQA047 leaf rolling
29 AQEE005 colored grain percentage
30 AQAW006 spikelet number
31 AQAW014 primary branch
32 AQAG006 grain yield
33 AQAG022 grain number
34 AQAG027 grain number
35 AQBZ003 days to heading
36 AQBZ006 days to heading
37 AQBZ007 days to heading
38 AQBZ008 plant height
39 AQBZ009 plant height
40 AQBZ013 plant height
41 AQCB007 spikelet number
42 AQCB033 spikelets per panicle length
43 AQCQ034 grain number
44 AQCY022 grain yield
45 AQCY029 filled grain number
46 AQEY021 1000-seed weight
47 AQGI129 biomass yield
48 AQGI204 total biomass yield
49 AQGI220 total biomass yield
50 AQHR020 tiller number
51 AQHR048 plant height
52 AQHR049 plant height
53 AQQ010 tiller number
54 AQQ013 tiller number
55 AQQ017 seed number
56 AQQ021 seed number
57 AQY009 plant height
58 AQY013 days to heading
59 AQY017 days to heading
60 CQAJ15 yield
61 CQAJ22 grain number
62 CQAL2 grain length
63 CQR11 flour color

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (+)
3 MCP:1000521 mature plant stage (+)
4 PO:0001053 3 leaf fully expanded (+)
5 PO:0007001 FR.01 early stage of fruit ripening (+)
6 PO:0007014 booting (+)
7 PO:0007073 2 formation of axillary shoot (+)
8 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000085 lower shoot (+)
2 MCP:1000097 third shoot internode (+)
3 MCP:1000237 second shoot internode (+)
4 MCP:1000257 xylem sap (+)
5 MCP:1000258 root segment, 1 cm from tip (+)
6 MCP:1000259 root segment, 1-2cm from root tip (+)
7 MCP:1000412 first leaf from top (+)
8 MCP:1000432 second shoot node from top (+)
9 MCP:1000440 first shoot node (+)
10 PO:0000003 whole plant (+)
11 PO:0000046 seminal root (+)
12 PO:0005059 root endodermis (+)
13 PO:0005772 exodermis (+)
14 PO:0006339 juvenile leaf (+)
15 PO:0008037 seedling (+)
16 PO:0009001 fruit (+)
17 PO:0009005 root (+)
18 PO:0009006 shoot system (+)
19 PO:0009049 inflorescence (+)
20 PO:0009051 spikelet (+)
21 PO:0009053 peduncle (+)
22 PO:0009054 inflorescence bract (+)
23 PO:0020039 leaf lamina (+)
24 PO:0020103 flag leaf (+)
25 PO:0020104 leaf sheath (+)
26 PO:0020122 inflorescence axis (+)
27 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000559 net manganese uptake (+)
2 MCT:1000560 net cadmium uptake (+)
3 MCT:2000012 yeast growth (+)
4 TO:0000019 seedling height (+)
5 TO:0000078 root dry weight (+)
6 TO:0000227 root length (+)
7 TO:0000280 seedling vigor (+)
8 TO:0000449 grain yield per plant (+)
9 TO:0000495 chlorophyll content (+)
10 TO:0000552 shoot dry weight (+)
11 TO:0006048 manganese concentration (+)
12 TO:0006049 iron concentration (+)
13 TO:0006052 copper concentration (+)
14 TO:0006053 zinc concentration (+)
15 TO:0006059 cadmium concentration (+)
16 TO:0006060 leaf chlorosis (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Ishikawa Satoru; Ishimaru Yasuhiro; Igura Masato; Kuramata Masato; Abe Tadashi; Senoura Takeshi; Hase Yoshihiro; Arao Tomohito; Nishizawa Naoko K; Nakanishi Hiromi; Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice. Proceedings of The National Academy of Sciences of The United States of America 2012:
PMID [23132948]


2  Ishimaru Yasuhiro; Takahashi Ryuichi; Bashir Khurram; Shimo Hugo; Senoura Takeshi; Sugimoto Kazuhiko; Ono Kazuko; Yano Masahiro; Ishikawa Satoru; Arao Tomohito; Nakanishi Hiromi; Nishizawa Naoko K; Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport. Scientific reports 2012:2
PMID [22368778]


3  Sasaki Akimasa; Yamaji Naoki; Yokosho Kengo; Ma Jian Feng; Nramp5 is a major transporter responsible for manganese and cadmium uptake in rice. The Plant cell 2012:24
PMID [22589467]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India