Rice gene details
Searching for LOC_Os07g26720 [OsRR7 type-A response regulator, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g26720.1 207 93 197 PF00072.16 Response_reg
2 LOC_Os07g26720.2 211 93 201 PF00072.16 Response_reg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
 
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
 
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
2 GO:0004871 signal transducer activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009735 response to cytokinin stimulus  
3 GO:0008150 biological_process (RGAP)
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
6 GO:0007165 signal transduction (RGAP)
7 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007068 ethylene regimen (+)
3 EO:0007069 gibberellic acid regimen (+)
4 EO:0007070 indole acetic acid regimen (+)
5 EO:0007270 continuous dark (no light) regimen (+)
6 EO:0007291 benzyladenine regimen (+)
7 MCE:1000038 cycloheximide (+)
8 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
9 MCE:1000063 epibrassinolide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQN16 soluble protein content
5 CQN35 leaf senescence
6 CQN36 leaf senescence
7 AQED003 days to heading
8 AQEE007 colored grain percentage
9 AQEE010 colored grain percentage
10 AQF068 anther length
11 CQAH33 seed dormancy
12 AQA024 root number
13 AQA026 root number
14 AQA047 leaf rolling
15 AQEE005 colored grain percentage
16 AQAG006 grain yield
17 AQAG022 grain number
18 AQAG027 grain number
19 AQBZ003 days to heading
20 AQBZ006 days to heading
21 AQBZ007 days to heading
22 AQBZ008 plant height
23 AQBZ009 plant height
24 AQBZ013 plant height
25 AQCB007 spikelet number
26 AQCB033 spikelets per panicle length
27 AQCQ034 grain number
28 AQCY022 grain yield
29 AQCY029 filled grain number
30 AQEY021 1000-seed weight
31 AQGI129 biomass yield
32 AQGI204 total biomass yield
33 AQGI220 total biomass yield
34 AQHR020 tiller number
35 AQHR048 plant height
36 AQHR049 plant height
37 AQQ010 tiller number
38 AQQ013 tiller number
39 AQQ017 seed number
40 AQQ021 seed number
41 AQY009 plant height
42 AQY013 days to heading
43 AQY017 days to heading
44 CQAJ15 yield
45 CQAJ22 grain number
46 CQAL2 grain length
47 CQR11 flour color
48 CQE56 seed dormancy
49 AQFR002 seedling vigor
50 AQFR005 seedling vigor
51 AQE093 tiller number
52 AQFE016 days to heading
53 AQFE017 days to heading
54 AQFE018 days to heading
55 AQFE019 days to heading
56 AQFE020 days to heading
57 AQCU151 panicle length
58 AQDR102 grain yield per panicle
59 AQDS075 spikelet sterility
60 CQAS82 panicle length
61 AQEN007 blast disease resistance
62 CQAV3 osmotic adjustment capacity
63 CQAW23 root number
64 CQAX7 plant height
65 AQCK003 seed dormancy

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 PO:0006340 adult leaf (+)
3 PO:0008037 seedling (+)
4 PO:0008039 stem base (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009046 flower (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]


2  Kitomi Yuka; Ito Hiroko; Hobo Tokunori; Aya Koichiro; Kitano Hidemi; Inukai Yoshiaki; The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. The Plant Journal 2011:67
PMID [21481033]


3  Jain Mukesh; Tyagi Akhilesh K; Khurana Jitendra P; Molecular characterization and differential expression of cytokinin-responsive type-A response regulators in rice (Oryza sativa). BMC Plant Biology 2006:6
PMID [16472405]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India