Rice gene details
Searching for LOC_Os07g46990 [copper/zinc superoxide dismutase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g46990.1 153 1 152 PF00080.12 Sod_Cu
2 LOC_Os07g46990.2 153 1 152 PF00080.12 Sod_Cu
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  2
N22 Root FC
  7
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
2 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010272 response to silver ion  
2 GO:0008152 metabolic process (RGAP)
3 GO:0006950 response to stress (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0009607 response to biotic stimulus (RGAP)
6 GO:0008150 biological_process (RGAP)
7 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005737 cytoplasm (RGAP)
2 GO:0005829 cytosol (RGAP)
3 GO:0005576 extracellular region (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000340 silver nanoparticles (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 CHLOROPHYLL-SYN chlorophyllide a biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD028 pericarp color
2 AQEN007 blast disease resistance
3 CQAV3 osmotic adjustment capacity
4 CQAW23 root number
5 CQAX7 plant height
6 AQAL036 biomass yield
7 AQAL056 deep root dry weight
8 AQBI005 pollen fertility
9 AQDL004 stomatal closure rate
10 AQCG002 male fertility restoration
11 AQCJ002 rice yellow mottle virus resistance
12 CQN58 spikelet number
13 AQE007 days to flower
14 AQE018 filled grain number
15 AQGD018 grain shattering
16 AQGD024 hull color
17 AQGD026 hull color
18 AQGJ010 blast disease resistance
19 AQCU006 days to heading
20 AQCU117 days to heading
21 CQA18 days to heading
22 CQA19 vegetative growth time
23 CQA20 reproductive growth time
24 AQCK010 days to heading
25 AQCV043 chalkiness of endosperm
26 CQE61 days to heading
27 CQN18 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007022 imbibition (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
3 PO:0009089 endosperm (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Nair Prakash M Gopalakrishnan; Chung Ill Min; Physiological and molecular level effects of silver nanoparticles exposure in rice (Oryza sativa L.) seedlings. Chemosphere 2014:112
PMID [25048895]


2  Wu Jiahe; Zhu Chuanfeng; Pang Jinhuan; Zhang Xiangrong; Yang Chunlin; Xia Guixian; Tian Yingchuan; He Chaozu; OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. The Plant journal : for cell and molecular biology 2014:80
PMID [25353370]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India