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Searching for LOC_Os08g02630
[photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed ] |
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Basic information [Interpro DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Interpro ID |
Domain Name |
1 |
LOC_Os08g02630.1 |
206 |
37 |
107 |
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seg |
2 |
LOC_Os08g02630.1 |
206 |
132 |
145 |
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seg |
3 |
LOC_Os08g02630.1 |
206 |
149 |
167 |
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seg |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007235 |
silicon nutrient regimen |
(+) |
2 |
EO:0007309 |
zinc nutrient regimen |
(+) |
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Metabolic Pathway details
QTL details
S. No. |
QTL Id |
QTL Associated Trait |
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1 |
AQED011 |
days to maturity |
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2 |
CQE62 |
chlorophyll content |
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3 |
AQCK005 |
seed dormancy |
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4 |
CQE63 |
seed dormancy |
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5 |
CQG7 |
leaf rolling time |
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6 |
CQN19 |
glutamine synthetase content |
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7 |
CQX30 |
internode length |
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8 |
CQX4 |
days to heading |
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9 |
CQN39 |
leaf senescence |
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10 |
CQAU2 |
spikelet number |
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0008037 |
seedling |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Song Alin; Li Ping; Fan Fenliang; Li Zhaojun; Liang Yongchao; The effect of Silicon on photosynthesis and expression of its relevant genes in rice (Oryza sativa L.) under high-zinc stress. PloS one 2014:9
PMID [25426937]
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