Rice gene details
Searching for LOC_Os08g03290 [glyceraldehyde-3-phosphate dehydrogenase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g03290.1 338 4 154 PF00044.16 Gp_dh_N
2 LOC_Os08g03290.1 338 159 316 PF02800.12 Gp_dh_C
3 LOC_Os08g03290.2 296 1 112 PF00044.16 Gp_dh_N
4 LOC_Os08g03290.2 296 117 274 PF02800.12 Gp_dh_C
5 LOC_Os08g03290.3 293 1 109 PF00044.16 Gp_dh_N
6 LOC_Os08g03290.3 293 114 271 PF02800.12 Gp_dh_C
7 LOC_Os08g03290.4 263 4 154 PF00044.16 Gp_dh_N
8 LOC_Os08g03290.4 263 159 217 PF02800.12 Gp_dh_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -2
N22 Root FC
  -1
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010044 response to aluminum ion  
2 GO:0000003 reproduction (RGAP)
3 GO:0006950 response to stress (RGAP)
4 GO:0005975 carbohydrate metabolic process (RGAP)
5 GO:0006091 generation of precursor metabolites and energy (RGAP)
6 GO:0009056 catabolic process (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0009791 post-embryonic development (RGAP)
9 GO:0009628 response to abiotic stimulus (RGAP)
10 GO:0009058 biosynthetic process (RGAP)
11 GO:0009987 cellular process (RGAP)
12 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005576 extracellular region (RGAP)
3 GO:0005829 cytosol (RGAP)
4 GO:0005739 mitochondrion (RGAP)
5 GO:0005886 plasma membrane (RGAP)
6 GO:0009536 plastid (RGAP)
7 GO:0005634 nucleus (RGAP)
8 GO:0005773 vacuole (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 DAPLYSINESYN-PWY lysine biosynthesis I
2 GLUCONEO-PWY gluconeogenesis
3 LEUSYN-PWY leucine biosynthesis
4 PWY-1042 glycolysis IV (plant cytosol)
5 PWY-2941 lysine biosynthesis II
6 PWY-3801 sucrose degradation to ethanol and lactate (anaerobic)
7 PWY-5097 lysine biosynthesis VI

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED011 days to maturity
2 CQE62 chlorophyll content
3 AQCK005 seed dormancy
4 CQE63 seed dormancy
5 CQG7 leaf rolling time
6 CQN19 glutamine synthetase content
7 CQX30 internode length
8 CQX4 days to heading
9 CQN39 leaf senescence
10 CQAU2 spikelet number
11 AQBK019 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Wang Zhan Qi; Xu Xiao Yan; Gong Qiao Qiao; Xie Chen; Fan Wei; Yang Jian Li; Lin Qi Shan; Zheng Shao Jian; Root proteome of rice studied by iTRAQ provides integrated insight into aluminum stress tolerance mechanisms in plants. Journal of proteomics 2014:98
PMID [24412201]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India