Rice gene details
Searching for LOC_Os08g36900 [alpha-amylase precursor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g36900.1 438 26 364 PF00128.16 Alpha-amylase
2 LOC_Os08g36900.1 438 365 425 PF07821.4 Alpha-amyl_C2
3 LOC_Os08g36900.2 390 26 343 PF00128.16 Alpha-amylase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
 
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0016787 hydrolase activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
Not found
1 GO:0005576 extracellular region (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007068 ethylene regimen (+)
2 EO:0007069 gibberellic acid regimen (-)
3 MCE:1000010 submergence stress (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-842 starch degradation

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK019 days to heading
2 CQAP1 scent
3 CQN37 leaf senescence
4 CQN38 leaf senescence
5 CQAS102 spikelet number
6 CQAS103 seed number
7 CQAS104 yield
8 CQAS92 plant height
9 CQAS93 days to heading
10 CQAS94 days to maturity
11 CQAS97 spikelet number
12 CQAS98 spikelet density
13 CQAS99 seed number
14 AQDQ051 spikelet number
15 AQDQ052 plant height
16 AQDQ053 panicle length
17 AQDQ054 panicle length
18 CQAX35 plant height
19 CQAS96 panicle number
20 AQBK001 days to heading
21 CQAS100 seed set percent
22 CQAS101 1000-seed weight
23 CQAS95 panicle length
24 CQC6 days to heading
25 AQFV020 seedling vigor
26 AQFV021 seedling vigor
27 AQFV022 seedling vigor
28 AQFW035 leaf width
29 AQBS019 plant height
30 AQBS026 panicle length
31 AQBS046 grain number
32 AQBS067 grain yield per panicle
33 AQFF044 spikelet sterility
34 CQAV6 osmotic adjustment capacity
35 CQAV7 osmotic adjustment capacity
36 CQAV9 osmotic adjustment capacity
37 CQAW25 tiller number
38 CQAW26 root number
39 AQDQ055 filled grain number
40 AQGB056 chalkiness of endosperm
41 AQGB057 chalkiness of endosperm
42 AQGB058 chalkiness of endosperm
43 AQGB059 chalkiness of endosperm
44 AQGB060 chalkiness of endosperm
45 AQGB061 chalkiness of endosperm
46 AQGB062 chalkiness of endosperm
47 AQGB063 chalkiness of endosperm
48 AQGB076 chalkiness of endosperm
49 AQGB077 chalkiness of endosperm
50 AQGB078 chalkiness of endosperm
51 AQGB079 chalkiness of endosperm
52 AQGB080 chalkiness of endosperm
53 AQGB081 chalkiness of endosperm
54 AQGB082 chalkiness of endosperm
55 AQGB083 chalkiness of endosperm
56 AQGB088 chalkiness of endosperm
57 AQGB089 chalkiness of endosperm
58 AQGB090 chalkiness of endosperm
59 AQGB091 chalkiness of endosperm
60 AQGB092 chalkiness of endosperm
61 AQGB093 chalkiness of endosperm
62 AQGB094 chalkiness of endosperm
63 AQGB095 chalkiness of endosperm
64 CQF11 rubisco content
65 AQBZ014 plant height
66 CQR9 flour color
67 EQC0032 seed shattering
68 AQEE003 seed density
69 AQDX013 osmotic adjustment capacity
70 AQFF069 plant height
71 AQFF072 plant height
72 AQFF013 total biomass yield
73 AQFF043 spikelet sterility
74 AQGS036 grain yield
75 AQHR052 plant height
76 AQFE100 plant height
77 AQFF057 panicle number
78 AQFF063 panicle number
79 AQBP007 grain core percent white
80 AQAP016 brown planthopper resistance
81 AQAP018 brown planthopper resistance
82 AQAW015 primary branch
83 AQCU171 spikelet fertility
84 AQCU228 leaf width
85 AQFW124 spikelet fertility
86 AQFW134 days to heading
87 AQDY110 panicle length
88 AQDY111 panicle length
89 AQDY112 panicle length
90 AQDY113 panicle length
91 AQDY114 panicle length
92 AQDY115 panicle length
93 AQO028 root to shoot ratio
94 CQE69 chlorophyll content
95 CQE70 grain number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007022 imbibition (+)
3 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009089 endosperm (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


2  Wu Jiahe; Zhu Chuanfeng; Pang Jinhuan; Zhang Xiangrong; Yang Chunlin; Xia Guixian; Tian Yingchuan; He Chaozu; OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. The Plant journal : for cell and molecular biology 2014:80
PMID [25353370]


3  Fukao Takeshi; Xu Kenong; Ronald Pamela C; Bailey-Serres Julia; A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. The Plant Cell 2006:18
PMID [16816135]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India