Rice gene details
Searching for LOC_Os08g42850 [peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g42850.1 262 156 253 PF00254.20 FKBP_C
2 LOC_Os08g42850.2 226 156 200 PF00254.20 FKBP_C
3 LOC_Os08g42850.4 274 156 224 PF00254.20 FKBP_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  2
N22 Root FC
  2
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  -1
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
2 GO:0005515 protein binding (RGAP)
3 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006979 response to oxidative stress  
2 GO:0009408 response to heat  
3 GO:0009414 response to water deprivation  
4 GO:0009644 response to high light intensity  
5 GO:0009651 response to salt stress  
6 GO:0010555 response to mannitol stimulus  
7 GO:0042538 hyperosmotic salinity response  
8 GO:0042542 response to hydrogen peroxide  
9 GO:0006464 protein modification process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009507 chloroplast  
2 GO:0016020 membrane (RGAP)
3 GO:0009579 thylakoid (RGAP)
4 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007075 high light intensity regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007198 water environment (+)
5 EO:0007383 watering regimen (+)
6 EO:0007404 drought environment (+)
7 EO:0007415 hydrogen peroxide (+)
8 MCE:1000044 mannitol (+)
9 MCE:1000069 dessication/dehydration stress (+)
10 MCE:1000091 methyl viologen/paraquat (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK019 days to heading
2 CQN37 leaf senescence
3 CQN38 leaf senescence
4 AQBK001 days to heading
5 CQAS100 seed set percent
6 CQAS101 1000-seed weight
7 CQAS95 panicle length
8 CQC6 days to heading
9 AQFW035 leaf width
10 AQBS019 plant height
11 AQBS026 panicle length
12 AQBS046 grain number
13 AQBS067 grain yield per panicle
14 CQAW25 tiller number
15 CQAW26 root number
16 AQDQ055 filled grain number
17 AQFF069 plant height
18 AQFF072 plant height
19 AQFF057 panicle number
20 AQFF063 panicle number
21 AQDY110 panicle length
22 AQDY111 panicle length
23 AQDY112 panicle length
24 AQDY113 panicle length
25 AQDY114 panicle length
26 AQDY115 panicle length
27 CQE70 grain number
28 AQO065 root length
29 AQDD008 ash content
30 AQDD009 ash content
31 AQHQ009 days to flower
32 AQDQ056 grain yield per plant
33 AQDQ057 grain yield per plant
34 AQCN027 rice yellow mottle virus resistance
35 CQAX25 plant height
36 AQA010 tiller number
37 AQA038 root thickness
38 AQDZ010 culm thickness
39 CQE71 panicle number
40 CQF10 soluble protein content
41 AQCU033 leaf width
42 AQFR013 seedling vigor
43 AQFR039 seedling vigor
44 AQFR050 seedling vigor
45 AQFV023 seedling vigor
46 AQFV024 seedling vigor
47 AQFV025 seedling vigor
48 AQFV026 seedling vigor
49 AQFV027 seedling vigor
50 AQFV028 seedling vigor
51 AQCC004 stigma exsertion
52 AQEE001 filled grain percentage
53 AQGA039 gelatinization temperature
54 CQE72 carbon content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009047 stem (+)
6 PO:0009089 endosperm (+)
7 PO:0020104 leaf sheath (+)
8 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000504 seedling fresh weight (+)
2 MCT:1000507 seedling chlorosis (+)
3 TO:0000019 seedling height (+)
4 TO:0000135 leaf length (+)
5 TO:0000227 root length (+)
6 TO:0000272 plant survivability (+)
7 TO:0000280 seedling vigor (+)
8 TO:0000370 leaf width (+)
9 TO:0000446 leaf drying (+)
10 TO:0000571 shoot fresh weight (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Park Hyun Ji; Lee Sang Sook; You Young Nim; Yoon Dae Hwa; Kim Beom-Gi; Ahn Jun Cheul; Cho Hye Sun; A Rice Immunophilin Gene, OsFKBP16-3, Confers Tolerance to Environmental Stress in Arabidopsis and Rice. International journal of molecular sciences 2013:14
PMID [23485991]


2  Ahn Jun Cheul; Kim Dae-Won; You Young Nim; Seok Min Sook; Park Jeong Mee; Hwang Hyunsik; Kim Beom-Gi; Luan Sheng; Park Hong-Seog; Cho Hye Sun; Classification of rice (Oryza sativa L. Japonica nipponbare) immunophilins (FKBPs, CYPs) and expression patterns under water stress. BMC Plant Biology 2010:10
PMID [21087465]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India