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Searching for LOC_Os09g13570
[CPuORF2 - conserved peptide uORF-containing transcript, expressed ] |
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Functional details
Molecular Function
Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0006970 |
response to osmotic stress |
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2 |
GO:0009414 |
response to water deprivation |
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3 |
GO:0009651 |
response to salt stress |
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4 |
GO:0009737 |
response to abscisic acid stimulus |
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5 |
GO:0042538 |
hyperosmotic salinity response |
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6 |
GO:0009058 |
biosynthetic process |
(RGAP) |
7 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
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Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007048 |
sodium chloride regimen |
(+) |
2 |
EO:0007105 |
abscisic acid regimen |
(+) |
3 |
EO:0007198 |
water environment |
(+) |
4 |
EO:0007404 |
drought environment |
(+) |
5 |
MCE:1000016 |
polyethylene glycol (PEG) treatment |
(+) |
6 |
MCE:1000285 |
recovery treatment from salt stress |
(+) |
7 |
MCE:1000286 |
recovery treatment from drought stress |
(+) |
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Metabolic Pathway details
QTL details
S. No. |
QTL Id |
QTL Associated Trait |
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1 |
AQEK010 |
iron sensitivity |
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2 |
AQGB064 |
chalkiness of endosperm |
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3 |
AQGB065 |
chalkiness of endosperm |
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4 |
AQGB066 |
chalkiness of endosperm |
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5 |
AQGB067 |
chalkiness of endosperm |
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6 |
AQGB068 |
chalkiness of endosperm |
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7 |
AQGB069 |
chalkiness of endosperm |
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8 |
AQGB070 |
chalkiness of endosperm |
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9 |
AQGB071 |
chalkiness of endosperm |
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10 |
AQGB085 |
chalkiness of endosperm |
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11 |
AQGB086 |
chalkiness of endosperm |
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12 |
AQGB087 |
chalkiness of endosperm |
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13 |
AQGB096 |
chalkiness of endosperm |
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14 |
AQGB097 |
chalkiness of endosperm |
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15 |
AQGB098 |
chalkiness of endosperm |
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16 |
AQGB099 |
chalkiness of endosperm |
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17 |
AQGB100 |
chalkiness of endosperm |
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18 |
AQGB101 |
chalkiness of endosperm |
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19 |
AQGB102 |
chalkiness of endosperm |
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20 |
AQBM008 |
albino plantlet differentiation frequency |
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21 |
AQBY003 |
root length |
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22 |
AQBR002 |
days to heading |
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23 |
AQBK037 |
spikelet number |
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24 |
AQAQ005 |
blast disease resistance |
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25 |
AQAQ014 |
blast disease resistance |
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26 |
AQAQ022 |
blast disease resistance |
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27 |
AQCU149 |
panicle length |
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28 |
AQCU206 |
plant height |
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29 |
AQCU258 |
spikelet fertility |
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30 |
AQFW027 |
spikelet number |
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31 |
AQFW178 |
spikelet number |
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32 |
CQAW27 |
root number |
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33 |
CQE74 |
shoot elongation rate |
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34 |
AQCN011 |
plant height |
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35 |
AQCN012 |
plant height |
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36 |
AQCN013 |
grain yield per plant |
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37 |
AQD036 |
relative water content |
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38 |
DQA6 |
cell membrane stability |
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39 |
AQU014 |
total shoot elongation under submergence |
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40 |
AQU019 |
total shoot elongation under submergence |
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41 |
AQU047 |
leaf senescence |
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42 |
CQS9 |
seminal root length |
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43 |
AQBM007 |
green plantlet differentiation frequency |
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44 |
AQBM010 |
green plantlet yield frequency |
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000107 |
post-germination stage |
(+) |
2 |
MCP:1000518 |
seedling development stage |
(+) |
3 |
PO:0007130 |
B reproductive growth |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
S. No. |
Primary rice gene loci |
Interacting rice gene loci |
Experiment type |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
Id |
Domain name/N or C term |
Bases
involved in interaction |
Reference point |
cis-elements [PLACE Id] |
1 |
LOC_Os09g13570 |
- |
--- |
LOC_Os05g49170 |
- |
- - |
- |
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Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP) |
2 |
LOC_Os09g13570 |
- |
--- |
LOC_Os07g47100 |
- |
- - |
- |
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Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP) |
3 |
LOC_Os09g13570 |
- |
--- |
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- |
- - |
- |
S000042  |
Protein-DNA interaction analysis : Yeast one-hybrid analysis |
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TSS - Transcriptional start site
TrSS - Translational start site |
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS |
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Related publications [Sorted by year] |
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1 |
Liu Citao; Mao Bigang; Ou Shujun; Wang Wei; Liu Linchuan; Wu Yanbin; Chu Chengcai; Wang Xiping; OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice. Plant molecular biology 2014:84
PMID [23918260]
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