Rice gene details
Searching for LOC_Os09g17560 [O-methyltransferase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g17560.1 365 35 83 PF08100.3 Dimerisation
2 LOC_Os09g17560.1 365 89 341 PF00891.10 Methyltransf_2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  251
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
 
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016740 transferase activity (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0008152 metabolic process (RGAP)
2 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005737 cytoplasm  
2 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007237 normal temperature regimen (+)
2 EO:0007270 continuous dark (no light) regimen (+)
3 EO:0007319 warm/hot air temperature regimen (+)
4 MCE:1000324 chlorophyll a (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEK010 iron sensitivity
2 AQGB064 chalkiness of endosperm
3 AQGB065 chalkiness of endosperm
4 AQGB066 chalkiness of endosperm
5 AQGB067 chalkiness of endosperm
6 AQGB068 chalkiness of endosperm
7 AQGB069 chalkiness of endosperm
8 AQGB070 chalkiness of endosperm
9 AQGB071 chalkiness of endosperm
10 AQGB085 chalkiness of endosperm
11 AQGB086 chalkiness of endosperm
12 AQGB087 chalkiness of endosperm
13 AQGB096 chalkiness of endosperm
14 AQGB097 chalkiness of endosperm
15 AQGB098 chalkiness of endosperm
16 AQGB099 chalkiness of endosperm
17 AQGB100 chalkiness of endosperm
18 AQGB101 chalkiness of endosperm
19 AQGB102 chalkiness of endosperm
20 AQBM008 albino plantlet differentiation frequency
21 AQBY003 root length
22 AQBR002 days to heading
23 AQBK037 spikelet number
24 AQAQ005 blast disease resistance
25 AQAQ014 blast disease resistance
26 AQAQ022 blast disease resistance
27 AQCU149 panicle length
28 AQCU206 plant height
29 AQCU258 spikelet fertility
30 AQFW027 spikelet number
31 AQFW178 spikelet number
32 CQAW27 root number
33 CQE74 shoot elongation rate
34 AQCN011 plant height
35 AQCN012 plant height
36 AQCN013 grain yield per plant
37 CQS9 seminal root length
38 AQBM007 green plantlet differentiation frequency
39 AQBM010 green plantlet yield frequency
40 AQFT005 osmotic adjustment capacity
41 AQR039 rooting depth
42 CQH30 osmotic adjustment capacity
43 CQAC3 blast disease resistance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000526 etiolated leaf (+)
2 PO:0009005 root (+)
3 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000581 N-acetylserotonin methyltransferase activity (+)
2 TO:0000599 enzyme activity trait (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Byeon Yeong; Lee Hyoung Yool; Lee Kyungjin; Park Sangkyu; Back Kyoungwhan; Cellular localization and kinetics of the rice melatonin biosynthetic enzymes SNAT and ASMT. Journal of pineal research 2014:56
PMID [24134674]


2  Jeong Jin Seo; Kim Youn Shic; Redillas Mark C F R; Jang Geupil; Jung Harin; Bang Seung Woon; Choi Yang Do; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field. Plant biotechnology journal 2012:
PMID [23094910]


3  Redillas Mark C F R; Jeong Jin S; Kim Youn S; Jung Harin; Bang Seung W; Choi Yang D; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions. Plant biotechnology journal 2012:10
PMID [22551450]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India