Rice gene details
Searching for LOC_Os09g28390 [cytochrome P450, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g28390.1 501 45 474 PF00067.14 p450
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  9
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  1
IR64 Root FC
  67

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0019825 oxygen binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009737 response to abscisic acid stimulus  
3 GO:0009749 response to glucose stimulus  
4 GO:0030912 response to deep water  
5 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)
2 EO:0007198 water environment (+)
3 EO:0007261 copper nutrient regimen (+)
4 EO:0007332 cold air temperature regimen (+)
5 EO:0007404 drought environment (+)
6 MCE:1000010 submergence stress (-)
7 MCE:1000044 mannitol (+)
8 MCE:1000241 D-glucose (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-5271 phaseic acid biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQBM007 green plantlet differentiation frequency
4 AQBM010 green plantlet yield frequency
5 AQAL006 deep root dry weight
6 CQAX26 plant height
7 AQEP006 seedling vigor
8 AQEM007 salt sensitivity
9 AQGG004 callus induction
10 AQAD002 sheath blight disease resistance
11 AQGI088 root dry weight
12 AQGI097 root dry weight
13 AQHR023 tiller number
14 AQAF038 blast disease resistance
15 AQAF039 blast disease resistance
16 AQAI004 leaf area
17 AQCA004 seed length
18 AQFJ010 panicle number
19 AQFJ049 panicle length
20 CQAS110 spikelet number
21 AQDY116 panicle length
22 AQDY117 panicle length
23 AQDY118 tiller number
24 AQHE006 root length
25 AQHE052 root weight
26 AQHE055 root weight
27 AQHE059 root weight
28 AQHE085 root weight
29 AQHE109 total biomass yield
30 AQHE134 plant height
31 AQHE140 plant height
32 AQF004 grain shattering
33 AQF040 seed dormancy
34 AQF071 anther length
35 AQF102 KClO3 resistance
36 AQFE116 tiller angle
37 CQAS108 panicle length
38 AQHF039 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000204 5 days post-anthesis stage (+)
2 MCP:1000330 pre-anthesis stage (+)
3 MCP:1000376 15 days post-anthesis stage (+)
4 MCP:1000454 10 days post-anthesis stage (+)
5 MCP:1000473 20 days post-anthesis stage (+)
6 MCP:1000477 25 days post-anthesis stage (+)
7 MCP:1000505 30 days post-anthesis stage (+)
8 MCP:1000518 seedling development stage (+)
9 MCP:1000521 mature plant stage (+)
10 PO:0001012 G early unicellular microspore stage (+)
11 PO:0007022 imbibition (+)
12 PO:0007065 LP.05 five leaves visible (+)
13 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009006 shoot system (+)
4 PO:0009010 seed (+)
5 PO:0009046 flower (+)
6 PO:0009066 anther (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


2  Liu Yang; Fang Jun; Xu Fan; Chu Jinfang; Yan Cunyu; Schläppi Michael R; Wang Youping; Chu Chengcai; Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars. Journal of genetics and genomics = Yi chuan xue bao 2014:41
PMID [24976122]


3  Ye Nenghui; Li Haoxuan; Zhu Guohui; Liu Yinggao; Liu Rui; Xu Weifeng; Jing Yu; Peng Xinxiang; Zhang Jianhua; Copper Suppresses Abscisic Acid Catabolism and Catalase Activity and Inhibits Seed Germination of Rice. Plant & cell physiology 2014:
PMID [25273891]


4  Guo Changkui; Ge Xiaochun; Ma Hong; The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages. Plant molecular biology 2013:82
PMID [23686450]


5  Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]


6  Song Shiyong; Dai Xiaoyan; Zhang Wen-Hao; A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice. Journal of experimental botany 2012:63
PMID [22859682]


7  Zhu Guohui; Ye Nenghui; Zhang Jianhua; Glucose-induced delay of seed germination in rice is mediated by the suppression of ABA catabolism rather than an enhancement of ABA biosynthesis. Plant & cell physiology 2009:50
PMID [19208695]


8  Oliver Sandra N; Dennis Elizabeth S; Dolferus Rudy; ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice. Plant & cell physiology 2007:48
PMID [17693452]


9  Saika Hiroaki; Okamoto Masanori; Miyoshi Kentaro; Kushiro Tetsuo; Shinoda Shoko; Jikumaru Yusuke; Fujimoto Masaru; Arikawa Taku; Takahashi Hirokazu; Ando Miho; Arimura Shin-Ichi; Miyao Akio; Hirochika Hirohiko; Kamiya Yuji; Tsutsumi Nobuhiro; Nambara Eiji; Nakazono Mikio; Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice. Plant & cell physiology 2007:48
PMID [17205969]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India