Rice gene details
Searching for LOC_Os09g37330 [OsSAUR39 - Auxin-responsive SAUR gene family member, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g37330.1 172 71 132 PF02519.6 Auxin_inducible
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -15
N22InfloresenceFC
  9
N22 Root FC
  25
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  -7
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
Biological process
Not found
1 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007070 indole acetic acid regimen (+)
2 EO:0007180 2,4-dichlorophenoxyacetic acid (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQF004 grain shattering
4 AQF040 seed dormancy
5 AQF071 anther length
6 AQF102 KClO3 resistance
7 CQAS108 panicle length
8 AQBK052 seed set percent
9 CQAS115 spikelet number
10 CQE75 space
11 CQE76 chlorophyll content
12 CQF12 soluble protein content
13 CQF13 rubisco content
14 AQGS010 panicle length
15 AQGS028 seed weight
16 AQGS031 grain yield per plant
17 CQAS117 yield
18 CQAW28 root number
19 AQBK054 seed set percent
20 CQAS113 seed set percent
21 CQAS114 1000-seed weight
22 AQAF042 blast disease resistance
23 AQCY007 panicle number
24 AQGE018 cooked kernel elongation
25 AQGI004 root dry weight
26 AQGI021 root dry weight
27 AQGI028 root dry weight
28 AQHR024 tiller number
29 AQEE008 colored grain percentage
30 AQGP032 1000-seed weight
31 AQHF023 leaf senescence
32 AQHF042 leaf senescence

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0009005 root (+)
3 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Wang Suikang; Xu Yanxia; Li Zhilan; Zhang Saina; Lim Jae-Min; Lee Kyun Oh; Li Chuanyou; Qian Qian; Jiang Dean; Qi Yanhua; OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:
PMID [24597623]


2  Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79
PMID [24798203]


3  Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India