Rice gene details
Searching for LOC_Os10g03850 [OsFBX352 - F-box domain containing protein, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g03850.1 425 16 63 PF00646.25 F-box
2 LOC_Os10g03850.2 364 16 63 PF00646.25 F-box
3 LOC_Os10g03850.3 332 16 63 PF00646.25 F-box
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0009737 response to abscisic acid stimulus  
2 GO:0009749 response to glucose stimulus  
3 GO:0010555 response to mannitol stimulus  
4 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)
2 EO:0007198 water environment (+)
3 MCE:1000044 mannitol (+)
4 MCE:1000241 D-glucose (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBY004 root length
2 AQBK020 days to heading
3 AQBK027 plant height
4 AQBK053 seed set percent
5 AQBK043 seed number
6 AQBK051 seed set percent
7 AQBK055 seed set percent
8 AQBI003 days to heading
9 AQBI006 pollen fertility

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
3 PO:0007022 imbibition (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009010 seed (+)
4 PO:0009046 flower (+)
5 PO:0009047 stem (+)
6 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 TO:0000019 seedling height (+)
2 TO:0002667 abscisic acid content (+)
3 TO:0010001 percent germination (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Song Shiyong; Dai Xiaoyan; Zhang Wen-Hao; A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice. Journal of experimental botany 2012:63
PMID [22859682]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India