Rice gene details
Searching for LOC_Os10g05720 [LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g05720.1 116 42 104 PF00234.14 Tryp_alpha_amyl
2 LOC_Os10g05720.2 110 42 104 PF00234.14 Tryp_alpha_amyl
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -116
N22 Root FC
  2
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  3
IR64 Root FC
  5

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0008289 lipid binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0009409 response to cold  
3 GO:0009414 response to water deprivation  
4 GO:0009633 drought tolerance  
5 GO:0009651 response to salt stress  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0042538 hyperosmotic salinity response  
8 GO:0006810 transport (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007332 cold air temperature regimen (+)
4 EO:0007404 drought environment (+)
5 MCE:1000016 polyethylene glycol (PEG) treatment (+)
6 MCE:1000044 mannitol (+)
7 MCE:1000286 recovery treatment from drought stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBY004 root length
2 AQBK020 days to heading
3 AQBK027 plant height
4 AQBK053 seed set percent
5 AQBK043 seed number
6 AQBK051 seed set percent
7 AQBK055 seed set percent
8 AQBI003 days to heading
9 AQBI006 pollen fertility
10 AQED016 plant height
11 AQED024 panicle length
12 AQED069 seed set percent
13 AQEE004 groat percentage
14 AQEE009 colored grain percentage
15 AQEE012 milled rice ratio
16 AQBH002 male fertility restoration
17 AQBH004 male fertility restoration

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000204 5 days post-anthesis stage (+)
2 MCP:1000332 open flower stage (+)
3 MCP:1000454 10 days post-anthesis stage (+)
4 MCP:1000518 seedling development stage (+)
5 PO:0001009 D pollen mother cell meiosis stage (+)
6 PO:0001010 F microspore release stage (+)
7 PO:0001012 G early unicellular microspore stage (+)
8 PO:0001013 H late unicellular microspore stage (+)
9 PO:0001014 I first mitotic division stage (+)
10 PO:0001032 E tapetum degeneration initiated (+)
11 PO:0001035 G anther dehiscence (+)
12 PO:0007041 inflorescence emergence from flag leaf sheath (+)
13 PO:0007065 LP.05 five leaves visible (+)
14 PO:0007130 B reproductive growth (+)
15 PO:0021004 inflorescence initiation stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0005052 plant callus (+)
3 PO:0006339 juvenile leaf (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009010 seed (+)
7 PO:0009030 carpel (+)
8 PO:0009037 lemma (+)
9 PO:0009038 palea (+)
10 PO:0009046 flower (+)
11 PO:0009049 inflorescence (+)
12 PO:0009066 anther (+)
13 PO:0020103 flag leaf (+)
14 PO:0025034 leaf (+)
15 PO:0025281 pollen (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000034 superoxide dismutase (SOD) activity (+)
3 MCT:1000035 peroxidase (POD) activity (+)
4 MCT:1000288 defective anther dehiscence (+)
5 MCT:1000536 relative shoot growth (+)
6 MCT:1000571 presence of defective pollen sacs (+)
7 MCT:1000572 defective tapetum degeneration (+)
8 MCT:1000573 early completion of tapetum degeneration (+)
9 MCT:1000574 abnormal microsporogenesis percentage (+)
10 TO:0000085 leaf rolling (+)
11 TO:0000272 plant survivability (+)
12 TO:0000340 total soluble sugar content (+)
13 TO:0000421 pollen fertility (+)
14 TO:0000455 seed set percent (+)
15 TO:0000564 spikelet width (+)
16 TO:0000592 1000-dehulled grain weight (+)
17 TO:0006002 proline content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Guo Changkui; Ge Xiaochun; Ma Hong; The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages. Plant molecular biology 2013:82
PMID [23686450]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India