Rice gene details
Searching for LOC_Os10g30850 [zinc finger, RING-type, putative, expressed ]
Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os10g30850.1 247 1 33 signal-peptide
2 LOC_Os10g30850.1 247 11 22 seg
3 LOC_Os10g30850.1 247 143 194 IPR013083 no description
4 LOC_Os10g30850.1 247 144 202 RING/U-box
5 LOC_Os10g30850.1 247 148 198 RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN
6 LOC_Os10g30850.1 247 149 187 IPR001841 ZF_RING_2
7 LOC_Os10g30850.1 247 149 186 IPR001841 no description
8 LOC_Os10g30850.1 247 228 239 seg
9 LOC_Os10g30850.2 237 2 30 coiled-coil
10 LOC_Os10g30850.2 237 133 184 IPR013083 no description
11 LOC_Os10g30850.2 237 134 192 RING/U-box
12 LOC_Os10g30850.2 237 138 188 RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN
13 LOC_Os10g30850.2 237 139 177 IPR001841 ZF_RING_2
14 LOC_Os10g30850.2 237 139 176 IPR001841 no description
15 LOC_Os10g30850.2 237 218 229 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -3
N22InfloresenceFC
  -7
N22 Root FC
  3
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  2
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0005488 binding (RGAP)
Biological process
Not found
1 GO:0008150 biological_process (RGAP)
Cellular component
Not found
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007332 cold air temperature regimen (+)
3 EO:0007404 drought environment (+)
4 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK043 seed number
2 AQBK051 seed set percent
3 AQBK055 seed set percent
4 AQBI003 days to heading
5 AQBI006 pollen fertility
6 AQAM031 rhizome number
7 AQAM032 rhizome length
8 AQAM033 rhizome internode length
9 AQAM034 rhizome internode number
10 AQAM035 rhizome dry weight
11 AQFJ069 grain yield per plant
12 AQGP005 days to heading
13 CQAE13 spikelet fertility
14 AQJ010 seed weight
15 AQEJ046 leaf area
16 AQEJ048 leaf width
17 AQEJ050 leaf area
18 AQEJ052 leaf width
19 AQEJ054 leaf area
20 AQEJ082 root activity
21 CQAS123 spikelet number
22 CQAS124 spikelet density
23 AQGC016 root penetration index
24 AQGC034 penetrated root thickness
25 CQAS118 plant height
26 CQAS121 panicle length
27 CQAS122 panicle number
28 AQF052 awn length
29 AQF072 anther length
30 AQF103 KClO3 resistance
31 AQF150 seed width
32 CQG8 leaf rolling time
33 CQB32 plant height
34 AQAB052 spikelet number
35 AQAC041 reducing sugar content
36 AQAG037 1000-seed weight
37 AQAG050 1000-seed weight
38 AQEX012 root length
39 AQGI216 total biomass yield
40 CQAS119 days to heading
41 CQAS120 days to maturity
42 CQAS126 seed set percent
43 CQAS129 seed number
44 AQCO111 pollen fertility
45 AQCO113 spikelet fertility

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007134 A vegetative growth (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Ramegowda Venkategowda; Basu Supratim; Krishnan Arjun; Pereira Andy; Rice GROWTH UNDER DROUGHT KINASE Is Required for Drought Tolerance and Grain Yield under Normal and Drought Stress Conditions. Plant physiology 2014:166
PMID [25209982]


2  Oh Se-Jun; Kim Youn Shic; Kwon Chang-Woo; Park Hye Kyong; Jeong Jin Seo; Kim Ju-Kon; Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions. Plant Physiology 2009:150
PMID [19429605]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India