Rice gene details
Searching for LOC_Os11g01810 [DNA methyltransferase protein, putative ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g01810.1 474 308 339 PF00145.9 DNA_methylase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  1
N22 Root FC
  4
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  2
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016740 transferase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0009651 response to salt stress  
3 GO:0008152 metabolic process (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0016043 cellular component organization (RGAP)
6 GO:0006464 protein modification process (RGAP)
7 GO:0040029 regulation of gene expression, epigenetic (RGAP)
8 GO:0006259 DNA metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-4021 β-alanine betaine biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQF104 KClO3 resistance
4 CQAH41 grain shattering
5 CQAH44 seed dormancy
6 AQBK033 spikelet number
7 AQGP078 1000-seed weight
8 AQFQ005 flower number
9 AQED017 plant height
10 AQED018 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (+)
3 PO:0007014 booting (+)
4 PO:0007016 4 flowering (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009047 stem (+)
6 PO:0009049 inflorescence (+)
7 PO:0020039 leaf lamina (+)
8 PO:0020104 leaf sheath (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Ahmad F; Huang X; Lan H X; Huma T; Bao Y M; Huang J; Zhang H S; Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase family in rice (Oryza sativa L.). Genetics and molecular research : GMR 2014:13
PMID [25061741]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India