Rice gene details
Searching for LOC_Os11g05110 [pyruvate kinase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g05110.1 528 30 379 PF00224.13 PK
2 LOC_Os11g05110.1 528 394 524 PF02887.8 PK_C
3 LOC_Os11g05110.2 528 30 379 PF00224.13 PK
4 LOC_Os11g05110.2 528 394 524 PF02887.8 PK_C
5 LOC_Os11g05110.3 439 110 290 PF00224.13 PK
6 LOC_Os11g05110.3 439 305 435 PF02887.8 PK_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0004743 pyruvate kinase activity  
2 GO:0005488 binding (RGAP)
3 GO:0016301 kinase activity (RGAP)
4 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006090 pyruvate metabolic process  
2 GO:0010044 response to aluminum ion  
3 GO:0048589 developmental growth  
4 GO:0008152 metabolic process (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0005975 carbohydrate metabolic process (RGAP)
7 GO:0006091 generation of precursor metabolites and energy (RGAP)
8 GO:0009056 catabolic process (RGAP)
9 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005829 cytosol  
2 GO:0016020 membrane (RGAP)
3 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 FERMENTATION-PWY mixed acid fermentation
2 PWY-2881 cytokinins 7-N-glucoside biosynthesis
3 PWY-2901 cytokinins 9-N-glucoside biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQF104 KClO3 resistance
4 CQAH41 grain shattering
5 CQAH44 seed dormancy
6 AQBK033 spikelet number
7 AQFQ005 flower number
8 AQED017 plant height
9 AQED018 plant height
10 AQE034 grain yield per panicle
11 AQE079 panicle number
12 AQE046 100-seed weight
13 AQE090 tiller number
14 CQAN19 plant height
15 CQP8 cold tolerance
16 AQAB005 panicle length
17 AQAB039 panicle length
18 AQCB027 panicle length
19 AQGI094 root dry weight
20 AQBC112 leaf angle
21 AQBC113 leaf angle
22 CQAB78 plant height
23 CQAB79 plant height
24 CQAS135 panicle number
25 CQAS136 spikelet number
26 CQAS138 seed number
27 CQAS142 seed number
28 CQAS141 spikelet number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000416 after internode elongation (+)
2 MCP:1000518 seedling development stage (+)
3 MCP:1000520 young inflorescence stage (+)
4 PO:0007014 booting (+)
5 PO:0007041 inflorescence emergence from flag leaf sheath (+)
6 PO:0007042 5 fruit formation (+)
7 PO:0007130 B reproductive growth (+)
8 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000096 first shoot internode (+)
2 MCP:1000097 third shoot internode (+)
3 MCP:1000237 second shoot internode (+)
4 MCP:1000246 fourth shoot internode (+)
5 MCP:1000316 third leaf from base (+)
6 MCP:1000351 fifth shoot internode (+)
7 PO:0000003 whole plant (+)
8 PO:0000037 shoot apex (+)
9 PO:0000074 parenchyma cell (+)
10 PO:0006340 adult leaf (+)
11 PO:0008037 seedling (+)
12 PO:0009005 root (+)
13 PO:0009010 seed (+)
14 PO:0009047 stem (+)
15 PO:0009049 inflorescence (+)
16 PO:0020033 coleoptile (+)
17 PO:0020039 leaf lamina (+)
18 PO:0020103 flag leaf (+)
19 PO:0020104 leaf sheath (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000316 viable seeds per panicle (+)
2 MCT:1000317 phosphoenolpyruvate content (+)
3 MCT:1000318 pyruvate content (+)
4 MCT:1000319 galactose content (+)
5 MCT:1000503 percent contribution of each internode to the total internode length (+)
6 TO:0000040 panicle length (+)
7 TO:0000135 leaf length (+)
8 TO:0000162 seed quality (+)
9 TO:0000165 panicle exsertion (+)
10 TO:0000207 plant height (+)
11 TO:0000300 glucose content (+)
12 TO:0000328 sucrose content (+)
13 TO:0000339 stem thickness (+)
14 TO:0000346 tiller number (+)
15 TO:0000430 germination rate (+)
16 TO:0000445 seed number (+)
17 TO:0000455 seed set percent (+)
18 TO:0000660 axillary bud dormancy (+)
19 TO:0002687 cell elongation trait (+)
20 TO:0006005 fructose content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Wang Zhan Qi; Xu Xiao Yan; Gong Qiao Qiao; Xie Chen; Fan Wei; Yang Jian Li; Lin Qi Shan; Zheng Shao Jian; Root proteome of rice studied by iTRAQ provides integrated insight into aluminum stress tolerance mechanisms in plants. Journal of proteomics 2014:98
PMID [24412201]


2  Zhang Yan; Xiao Wenkai; Luo Lijuan; Pang Jinhuan; Rong Wei; He Chaozu; Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice. Planta 2012:235
PMID [21805151]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India