Rice gene details
Searching for LOC_Os12g18900 [aminotransferase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os12g18900.1 470 80 454 PF00266.11 Aminotran_5
2 LOC_Os12g18900.2 333 80 326 PF00266.11 Aminotran_5
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016740 transferase activity (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0006979 response to oxidative stress  
3 GO:0009412 response to heavy metal  
4 GO:0010039 response to iron ion  
5 GO:0010288 response to lead ion  
6 GO:0008152 metabolic process (RGAP)
7 GO:0009987 cellular process (RGAP)
8 GO:0008150 biological_process (RGAP)
9 GO:0009058 biosynthetic process (RGAP)
10 GO:0006464 protein modification process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000008 methyl viologen (MV) (+)
3 MCE:1000138 lead nitrate regimen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY0-1021 alanine biosynthesis III

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK002 days to heading
2 CQC7 days to heading
3 AQCV009 grain length
4 CQE82 rubisco to chlorophyll ratio
5 AQCI004 phosphorus sensitivity
6 AQCI007 phosphorus sensitivity
7 AQCI010 phosphorus sensitivity
8 AQCI013 phosphorus sensitivity
9 CQF14 rubisco to nitrogen content ratio

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India