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Searching for LOC_Os12g19304 
[Fe-S metabolism associated domain containing protein, expressed ] |
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| Basic information [Pfam DB] |
Graphical representation of the protein domains |
| S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
| 1 |
LOC_Os12g19304.1 |
414 |
17 |
290 |
PF02445.8 |
NadA |
| 2 |
LOC_Os12g19304.2 |
712 |
73 |
199 |
PF02657.7 |
SufE |
| 3 |
LOC_Os12g19304.2 |
712 |
249 |
588 |
PF02445.8 |
NadA |
| 4 |
LOC_Os12g19304.4 |
377 |
2 |
253 |
PF02445.8 |
NadA |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
| N22 Flag-leaf FC |
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| N22InfloresenceFC |
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| N22 Root FC |
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| IR64 Flag-leaf FC |
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| IR64InfloresenceFC |
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| IR64 Root FC |
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Functional details
Molecular Function
Biological process
| S. No. |
GO Id |
GO Description |
| 1 |
GO:0009412 |
response to heavy metal |
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| 2 |
GO:0046686 |
response to cadmium ion |
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| 3 |
GO:0008152 |
metabolic process |
(RGAP) |
| 4 |
GO:0009987 |
cellular process |
(RGAP) |
| 5 |
GO:0006091 |
generation of precursor metabolites and energy |
(RGAP) |
| 6 |
GO:0009058 |
biosynthetic process |
(RGAP) |
| 7 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
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Cellular component
| S. No. |
GO Id |
GO Description |
| 1 |
GO:0009536 |
plastid |
(RGAP) |
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Environment details
| S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
EO:0007223 |
cadmium chloride |
(+) |
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Metabolic Pathway details
| S. No. |
Pathway Id |
Pathway Description |
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| 1 |
PWY-3701 |
biotin biosynthesis II |
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QTL details
| S. No. |
QTL Id |
QTL Associated Trait |
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| 1 |
AQBK002 |
days to heading |
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| 2 |
CQC7 |
days to heading |
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| 3 |
AQCV009 |
grain length |
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| 4 |
CQE82 |
rubisco to chlorophyll ratio |
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| 5 |
AQCI004 |
phosphorus sensitivity |
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| 6 |
AQCI007 |
phosphorus sensitivity |
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| 7 |
AQCI010 |
phosphorus sensitivity |
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| 8 |
AQCI013 |
phosphorus sensitivity |
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| 9 |
CQF14 |
rubisco to nitrogen content ratio |
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Plant developmental stage / tissue details
Plant development stage
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
PO:0009005 |
root |
(+) |
| 2 |
PO:0025034 |
leaf |
(+) |
Others
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| Not found |
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Trait details
Physical interaction details
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Interaction type: protein-protein
Interaction type: protein-DNA
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| Related publications [Sorted by year] |
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| 1 |
Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]
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